Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P18
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   163   1e-41
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   163   1e-41
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   1.9  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.5  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.4  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.4  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  163 bits (397), Expect = 1e-41
 Identities = 73/91 (80%), Positives = 82/91 (90%)
 Frame = +1

Query: 214 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD 393
           R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD
Sbjct: 24  RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83

Query: 394 QFHIRMRLHPFHVIRINKMLSCAGADRLQTG 486
            FH+R+R HPFHV+RINKMLSCAGADRLQTG
Sbjct: 84  SFHLRVRAHPFHVVRINKMLSCAGADRLQTG 114



 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 25/41 (60%), Positives = 28/41 (68%)
 Frame = +3

Query: 144 MGRRPARCYRYCKNKPYPKSRFCPGCA*PKDPYFRLGQKES 266
           M RRPARCYRYCKNKPYPKSR+       K   F LG+K +
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRA 41



 Score = 33.9 bits (74), Expect = 0.017
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 504 GKPKGTVARVRIGQPIMSVRS 566
           GKP G VARV IGQ +MSVR+
Sbjct: 120 GKPNGLVARVNIGQVLMSVRT 140


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  163 bits (397), Expect = 1e-41
 Identities = 73/91 (80%), Positives = 82/91 (90%)
 Frame = +1

Query: 214 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD 393
           R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD
Sbjct: 24  RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83

Query: 394 QFHIRMRLHPFHVIRINKMLSCAGADRLQTG 486
            FH+R+R HPFHV+RINKMLSCAGADRLQTG
Sbjct: 84  SFHLRVRAHPFHVVRINKMLSCAGADRLQTG 114



 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 25/41 (60%), Positives = 28/41 (68%)
 Frame = +3

Query: 144 MGRRPARCYRYCKNKPYPKSRFCPGCA*PKDPYFRLGQKES 266
           M RRPARCYRYCKNKPYPKSR+       K   F LG+K +
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRA 41



 Score = 33.5 bits (73), Expect = 0.022
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 504 GKPKGTVARVRIGQPIMSVRS 566
           GKP G VARV IGQ +MSVR+
Sbjct: 120 GKPNGLVARVNIGQILMSVRT 140


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 226 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 345
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 44   LVIGINVSLLFVLFIKKRSVYITKIIFWFISEH 142
            ++I + +S+  +  I   S+ + +II WF SEH
Sbjct: 1107 VIISLGISIGVMFLIMSGSI-VVEIIHWFFSEH 1138


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 232 KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 348
           KI   +  +KRA +D   LC+  +S + E ++  +LE+G
Sbjct: 56  KISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 513 WVFPNAPRIP 484
           W+FPNAP IP
Sbjct: 48  WIFPNAPSIP 57


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 11  GGAYQVFLYKSLVIGINVSLLFV--LFIKKRSVYITKIIFW 127
           G  Y+  ++ S +  +  S LF+  LF+K ++VY +++  W
Sbjct: 276 GLVYEKIVFPSRIAAVLKSKLFLIFLFLKNKNVYYSRLDEW 316


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 340 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 221
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 247  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 390
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,570
Number of Sequences: 5004
Number of extensions: 54576
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)