Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_P18
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 157 6e-39
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 155 2e-38
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 150 9e-37
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.64
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.85
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826... 31 0.85
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116... 30 1.1
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 29 2.6
04_03_0365 - 14950398-14950880,14950967-14951262,14951277-149514... 28 4.5
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 28 6.0
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 27 7.9
04_02_0021 - 8629891-8630319 27 7.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 157 bits (381), Expect = 6e-39
Identities = 69/93 (74%), Positives = 80/93 (86%)
Frame = +1
Query: 208 FVRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 387
+ RGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SSEALEA RI CNKY+ KN G
Sbjct: 22 YCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAG 81
Query: 388 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTG 486
KD FH+R+R+HPFHV+RINKMLSCAGADRLQTG
Sbjct: 82 KDAFHLRVRVHPFHVLRINKMLSCAGADRLQTG 114
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = +3
Query: 144 MGRRPARCYRYCKNKPYPKSRFCPGCA*PKDPYFRLGQKE 263
MGRRPARCYR KNKPYPKSR+C G PK + +G K+
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKK 40
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 504 GKPKGTVARVRIGQPIMSVR 563
GKP+GT ARV IGQ ++SVR
Sbjct: 120 GKPQGTCARVDIGQVLLSVR 139
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 155 bits (376), Expect = 2e-38
Identities = 68/93 (73%), Positives = 80/93 (86%)
Frame = +1
Query: 208 FVRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 387
+ RGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI CNKY+ K+ G
Sbjct: 329 YCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAG 388
Query: 388 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTG 486
KD FH+R+ HP+HV+RINKMLSCAGADRLQTG
Sbjct: 389 KDAFHLRVCAHPYHVLRINKMLSCAGADRLQTG 421
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +3
Query: 156 PARCYRYCKNKPYPKSRFCPGCA*PKDPYFRLGQKESDSG*LP 284
P RCYR KNKPYPKSR+C G PK F +GQK+ + P
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFP 354
Score = 34.3 bits (75), Expect = 0.069
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 504 GKPKGTVARVRIGQPIMSVR 563
GKP GT ARVRIGQ ++SVR
Sbjct: 427 GKPTGTCARVRIGQVLLSVR 446
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 150 bits (363), Expect = 9e-37
Identities = 66/93 (70%), Positives = 79/93 (84%)
Frame = +1
Query: 208 FVRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 387
+ RGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA RI CNKY+ K+ G
Sbjct: 18 YCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAG 77
Query: 388 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTG 486
KD FH+R+R+HPFHV+RINKMLSCAGADRLQTG
Sbjct: 78 KDAFHLRVRVHPFHVLRINKMLSCAGADRLQTG 110
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +3
Query: 165 CYRYCKNKPYPKSRFCPGCA*PKDPYFRLGQKE 263
CYR KNKPYPKSR+C G PK + +G K+
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKK 36
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 504 GKPKGTVARVRIGQPIMSVR 563
GKP+GT ARV IGQ ++SVR
Sbjct: 116 GKPQGTCARVDIGQVLLSVR 135
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 268 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 387
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.85
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 373 RGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLS 266
R CC GL P P S+ R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>03_02_0721 -
10677286-10678018,10679293-10679373,10682516-10682645,
10682969-10683101
Length = 358
Score = 30.7 bits (66), Expect = 0.85
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 528 ALLCPWVFPNAPRIPSLEPISSSAR-QHFIDAD 433
ALLC V P+ P IP LEP+ +A+ +D D
Sbjct: 278 ALLCGGVAPDGPGIPGLEPLDVAAQADDLLDMD 310
>01_06_0188 -
27310814-27311138,27311197-27311547,27311682-27311693,
27313598-27313662,27314945-27314968
Length = 258
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -1
Query: 331 QNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPGQNRDLGYGLFLQYR*HLAGR 152
++ AA H L R P+ + F P + G RDL LF YR GR
Sbjct: 114 EDQAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQLGLGRDLRKKLFGHYRKPQRGR 173
>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 177 NIDNISLVGAPLCSEINQNIILVIYTDR 94
N+DNI ++ P+CS++ IL I DR
Sbjct: 1412 NVDNIDVLCVPICSQLTSLKILSIEEDR 1439
>04_03_0365 -
14950398-14950880,14950967-14951262,14951277-14951413,
14951562-14952039,14952203-14952215
Length = 468
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 547 GCPIRTRATVPLGFPERTTHPQSGAYQLQRTTTF 446
GCP + A+ P P + H QS QLQ T F
Sbjct: 407 GCPPKRPASAPSAPPAQDCHAQSYDVQLQYDTDF 440
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 463 QRTTTFY*CG*HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQ 329
+ TTT CG HGR ++SS L+++++ G+ +Y + PQ
Sbjct: 134 RETTTTSSCGEHGRILLSSP-SPSLFKANVLGSLAYKYITMGIPQ 177
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 489 CVVRSGKPKGTVARVRIGQPIMSVRS 566
CV+ +G G +A RIG P + VRS
Sbjct: 278 CVLVAGSQSGVLAAERIGMPCIVVRS 303
>04_02_0021 - 8629891-8630319
Length = 142
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 358 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGD 489
C+ Y +K D +R+RL PF + K CA + T D
Sbjct: 64 CSTYTIKGVSPDA--VRLRLFPFSFLGRAKQYFCANRAAVNTWD 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,962,906
Number of Sequences: 37544
Number of extensions: 370862
Number of successful extensions: 1014
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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