Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P17
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    28   0.93 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.6  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   1.6  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   4.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.9  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.9  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 350 LPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLP 529
           LPE+E E T  ++ G+G P K   K T+      E   E    ++    +T+P  ++ L 
Sbjct: 427 LPEEERE-TYTLEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLE 485

Query: 530 APKVVW 547
                W
Sbjct: 486 EKNEEW 491


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 279 TETLKTVSPATIEPQASVFSSRQHSQKTRANTLAKSTMESANPKSTL 419
           T +  T+S ++  P +S FSS   S K+ ++  +  +  S+   STL
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 156 EDAGPSKKNFNTSPVSCVTEPRT 88
           E A PS+ N  +SPVS  ++P T
Sbjct: 89  ESATPSETNSYSSPVSSYSDPAT 111


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 137 LEGPASSSRTRLSKDMMAKAGDVTM 211
           L G ++SSRTRL+KDM    G  +M
Sbjct: 116 LTGTSNSSRTRLNKDMRRDFGMTSM 140


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 338 FKTTLPEDEGEYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQ-KPEKVIVVKHGQDVTIP 508
           F+T LPED  ++       +G+PQK  H++ L+  +  + +Q  PE+   +  G  +  P
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEGFFLHGP 160

Query: 509 C 511
           C
Sbjct: 161 C 161


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 173 SKDMMAKAGDVTMIYCMYGSNPLAHPNYFKNGKDVNGNP 289
           S   + K   +T+      S   A   YF  G D NGNP
Sbjct: 181 SASTIVKGRTITLALISRRSKQRAGTRYFTRGLDENGNP 219


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 581 PCNRLEASRYGSRRPWALADRSPCTES*HPVRVSQRSPF 465
           P + L+ + YG RRP  L+  SP +   +   +S    F
Sbjct: 27  PVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYTF 65


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 308 HNRTSGKRLLFKTTLPEDE--GEYTCEVDNGVGKPQKHSLKLTVVSAP 445
           +N  SG  L   TT+P DE   ++T +VD    +    SL L + S+P
Sbjct: 305 NNNKSGDSLEMSTTIPSDEENEDFTSKVD--AMEIHSGSLPLNIDSSP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,772
Number of Sequences: 5004
Number of extensions: 52575
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)