Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_P17
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 32 0.31
11_01_0184 - 1444246-1444434,1446291-1446719 31 0.72
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 30 1.7
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 29 2.9
02_01_0281 - 1879519-1879605,1880761-1880851,1881343-1881849,188... 28 5.1
08_02_1131 + 24523435-24523447,24526425-24527509 28 6.7
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548... 28 6.7
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670... 28 6.7
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288... 28 6.7
10_08_0942 + 21724595-21724736,21725184-21725272,21725421-217254... 27 8.9
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 401 KPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAP 535
+P +H ++ + +P ++ E + + HG D + C TG PAP
Sbjct: 77 QPLEHGVEDEIDGSPYHDALGEHYVGILHGVDASPACSRTGAPAP 121
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 31.1 bits (67), Expect = 0.72
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 47 ERDSSLLNRRRHLGVRGSVTQLTGDVLKFFLEGPASSSRTRLSKDMMAKAGDVTMIYCMY 226
E + RRR G RG+ L+FF G R ++ + +AK DV C+
Sbjct: 109 EEGVTAARRRRVRGTRGTRVVGRRRFLRFFGSGSHEEKRKAMANEFVAKLTDVCWDKCIT 168
Query: 227 GS 232
GS
Sbjct: 169 GS 170
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +2
Query: 296 RITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 475
RI R R +RL +P ++T +D +G ++ LK A + +K I
Sbjct: 56 RIQRQRRVLKQRL----KVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAKKPI 111
Query: 476 VVKHGQDVTIPCKVTGLPAPKVVWSHNAKPL 568
VVK+G D + + A VV +H+ P+
Sbjct: 112 VVKYGLD-HVTYLIEQSKAQLVVIAHDVDPI 141
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +2
Query: 14 GGAICLVNSGNERDSSLLNRRRHLGVRGSVTQLTGDVLKFFLEGPASSSRTRLSKDMMAK 193
G I +VN+G E + RRRH RG+ + +FF A+++ R +++
Sbjct: 637 GNPINIVNNGIEDSGQPIPRRRH--NRGNRKAQSSHKQRFFPGNFANNTNNRSHYGGVSE 694
Query: 194 AGDVTMIYCMYGSNPLAH 247
+ I YGS P H
Sbjct: 695 SPPSNSIGYFYGSTPENH 712
>02_01_0281 -
1879519-1879605,1880761-1880851,1881343-1881849,
1881939-1882009,1882102-1882181,1882287-1882464
Length = 337
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 412 LLGFADSIVDFASVFALVFWECCLEEKTLA*GSIVAGDTVFRVSVHVLTILEVVRMSQRV 233
LLGF++ V S F LVF +E G + + R+ V I+E +S +
Sbjct: 164 LLGFSEGNVQETSEFDLVFLHVAMENTNSKLGKLGMKTDLNRLDKLVGAIMEAAPISSAI 223
Query: 232 AS 227
AS
Sbjct: 224 AS 225
>08_02_1131 + 24523435-24523447,24526425-24527509
Length = 365
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -3
Query: 566 EASRYGSRRPWALADRSPCTES*HPVRVSQRSPFQASARTSVH*LQSISKSAFGVCRLHC 387
EA R G R P+ + P RV+ PF A+A +V L ++ +
Sbjct: 147 EAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRE 206
Query: 386 RLRKCIRPRLLG 351
LR C P L G
Sbjct: 207 TLRTCEWPTLAG 218
>08_01_0632 -
5479118-5479555,5479701-5479866,5480452-5480565,
5480713-5480849
Length = 284
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 373 VFALVFWEC-CLEEKTLA*GSIVAGDTVFRVSVHVLTILEV 254
VF +C CLE+ + G + G+T F +SV V + E+
Sbjct: 106 VFTEFISKCPCLEDLVVEEGGFIGGETGFTLSVEVTEMTEI 146
>03_02_0928 +
12464325-12464498,12466494-12466679,12466929-12467021,
12467212-12467394,12467506-12467608,12467695-12467865,
12468086-12469084,12469178-12469254,12469485-12470337,
12470878-12471000,12471526-12471878
Length = 1104
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 131 FFLEGPASSSRTRLSKDMMAKAGDVTMIYCMYGSNPLAHPNYFKN 265
F+LE SS L +M+ +A T C P HP + N
Sbjct: 447 FYLEDGNGSSEQYLDHEMVEQASCCTAETCHANEEPSMHPQVYPN 491
>02_01_0397 -
2877242-2878479,2878557-2878861,2879862-2880549,
2881998-2882016
Length = 749
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +2
Query: 188 AKAG-DVTMIYCMY-GSNPLAHPNYFKNGKDVNG-----NPEDRITRHNRTSGKR 331
A AG +V ++ Y GS P P Y +NGKD++G P D I ++ + +R
Sbjct: 583 APAGNEVVIVPPRYSGSIPPTAPRYMENGKDISGRSLKAKPGDNILQNGSSKPER 637
>10_08_0942 +
21724595-21724736,21725184-21725272,21725421-21725496,
21726151-21726170,21726283-21726594,21726746-21726784,
21727120-21727308
Length = 288
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -2
Query: 609 MTRPLSLTVALQPLRGFALWLQTTLGAGRPVTLHGIVTSCPCFTTITFSGFCSYFGALTT 430
M P S+ V LQ GF + +G GRP+ L G++ T T ++ G
Sbjct: 16 MENPFSVKV-LQVFTGFGVGCGVGIGVGRPIYL-GVIPGLNQVMTATRGATDAFSGVTRH 73
Query: 429 VN 424
VN
Sbjct: 74 VN 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,696
Number of Sequences: 37544
Number of extensions: 379280
Number of successful extensions: 1001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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