Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P11
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.28 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   0.86 
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.5  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   3.5  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   4.6  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.1  
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    24   8.0  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    24   8.0  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 130 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 32
           +L  + L+ ++WV VT   +   G YGY  LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 4   ASEKHESHRQHEDYNNHI 57
           ++ +H SHR+HE Y  H+
Sbjct: 145 SNHRHGSHRRHEPYRTHL 162


>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 146 NEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPNDN-VT*AVFTDLNS 322
           N+ +    D S +LS    +  + + +IAS     DE+ +   +PND+  T  +F+D+N+
Sbjct: 17  NKEIDSLDDVSALLS--QRLSNVFEFSIASEEVQSDEVFEDT-YPNDDQATFNLFSDVNT 73

Query: 323 KVRSITGVDLK 355
            V  +T   +K
Sbjct: 74  VVTKVTEPSIK 84


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 139 TCGELIISILEYSLWVDVTGQCQGREGKYGY 47
           TCG L+I I    LWV++T +    +G  G+
Sbjct: 22  TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 57  LPSRP*HWPVTSTHKEYSRME 119
           +P RP HW  T+T  E  RME
Sbjct: 110 IPRRP-HWDQTTTAVELDRME 129


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = -3

Query: 252 SCDSPVEAIAS-WANGIMT 199
           SCDSPV+++AS  A GI+T
Sbjct: 51  SCDSPVKSLASHGAVGIVT 69


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  VTSTHKEYSRMEMINSP 134
           +TST  EYS +  IN+P
Sbjct: 71  LTSTDSEYSHLAFINTP 87


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 310 SEYCLSYVVIRKVDSLK 260
           +++C+ Y +IRKV  +K
Sbjct: 78  NQFCMPYTIIRKVSRVK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,159
Number of Sequences: 5004
Number of extensions: 23354
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)