Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P11
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685...    28   2.5  
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635...    27   5.7  
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187...    26   7.6  
04_04_1186 + 31567425-31567438,31568168-31568254,31568335-315684...    26   7.6  
01_01_0863 - 6724200-6724414,6726300-6726576,6726976-6727145,672...    26   7.6  

>02_05_1302 +
           35567585-35567848,35568303-35568368,35568475-35568573,
           35569028-35569061,35569147-35569246,35569738-35569813,
           35569974-35570315,35570426-35570569,35570840-35571073,
           35571149-35571212,35571297-35571340,35571431-35571601
          Length = 545

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 120 FPFLSTLCGSMSLANVKAA-RANMVIIIFMLSVTFVF 13
           FPFL T     + +N+KAA    +V ++F +SVT  F
Sbjct: 190 FPFLMTRACCEACSNLKAAFLVAVVFLLFCMSVTLYF 226


>06_01_0837 -
           6355315-6355342,6356185-6356361,6356579-6356662,
           6356989-6357542,6358086-6358322
          Length = 359

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 112 LEYSLWVDVTGQCQGREGKYGYYNLHV-VGD 23
           L+ S W+DV  Q +G  G+Y    LH+ +GD
Sbjct: 103 LKESKWIDVIDQFKGILGQYSDLPLHIALGD 133


>07_03_0244 -
           15715047-15715163,15716672-15716824,15718629-15718748,
           15718830-15719045,15719902-15719968,15720051-15720125,
           15720607-15720698,15721053-15721154,15721642-15721711,
           15721788-15721846,15721947-15722031,15722443-15722520,
           15722627-15722725,15722819-15722910,15725572-15725661,
           15725937-15725995,15727966-15728281,15728627-15728702,
           15729998-15730308,15730577-15730634,15731082-15731092,
           15731247-15731397,15733372-15733778
          Length = 967

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 158 KKNPDKSVILSAFSVMIPLAQLAIASTGESHDEL 259
           KK+P K  +L+A      LA+    S    HDE+
Sbjct: 409 KKDPSKKAVLTAMQQAAVLAECLHVSRRSRHDEM 442


>04_04_1186 +
           31567425-31567438,31568168-31568254,31568335-31568410,
           31568516-31568590,31568678-31568731,31569722-31569781,
           31569910-31570026,31570389-31570483,31570603-31570805,
           31571224-31571321,31571585-31571688,31571872-31571920,
           31571988-31572110,31572566-31572648,31573533-31573674,
           31574399-31574428,31574452-31574508,31574545-31574615,
           31574715-31575318
          Length = 713

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  PQRVLKNGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPL 214
           P    K  +  F AR+F+   + +  KSV++ + SV I L
Sbjct: 183 PALATKISSASFVARLFHHAFEDSRPKSVLVHSLSVCISL 222


>01_01_0863 -
           6724200-6724414,6726300-6726576,6726976-6727145,
           6727250-6727526
          Length = 312

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 196 ERGQYHTLIWVFLDDFIKHTCGELIISILEYSLWVDVTGQCQGREGKYGYYNLHVVGD 23
           E  + H  + +   D  +H   E++ +  ++    DV   C G  GKY Y    + GD
Sbjct: 212 ELREKHPDVAIMHTDLFRHV-SEMVQNPDKFGFQKDVLSVCCGGPGKYHYNTRIICGD 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,045,923
Number of Sequences: 37544
Number of extensions: 136894
Number of successful extensions: 280
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)