Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P09
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   1.1  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    24   5.8  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   7.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   7.6  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   7.6  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 22   CT*NDVSSTISNIFFLLLADLISKID 99
            C   ++S TISN +FL L++++ +I+
Sbjct: 1175 CFSKEISQTISNYYFLSLSEMLIQIN 1200


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 96  DL*NEICK*QEKYIRYRRRY 37
           +L N IC+ +E+Y +Y  RY
Sbjct: 649 ELYNIICRAEERYSQYENRY 668


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 221 HRCLSWN*HLPMGRTVSAYQSTGWCNGIRYQVSIQN 328
           +R  S+  H+P+ R ++ + ++G  NG    V + N
Sbjct: 29  NRIFSYAEHVPLNRYLTQWNNSGRRNGFSNNVELFN 64


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 186 ATSKKLENKIVDIVVFPGIDIYQWD 260
           A  +K +N I+  VV   +D++ WD
Sbjct: 855 AVVEKSKNPIILHVVLQALDVFPWD 879


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 35   TYLLRYLIYFSCYLQISFQRSTPQDSHYVAAVVEYQVSRGNVEQN--RLNYISHI 193
            TYL   + Y S  LQ    +S+PQ SH++         R  + +N   LNY  +I
Sbjct: 1089 TYLHPNVTYPSECLQSFALKSSPQKSHWLRKRNYIAEKRKKILENLASLNYYEYI 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,453
Number of Sequences: 5004
Number of extensions: 27485
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)