Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P09
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0347 + 2658545-2659309                                           29   0.98 
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    26   6.9  
07_03_1468 - 26739872-26740912                                         26   6.9  
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848     26   6.9  
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360...    26   6.9  
05_04_0317 + 20157849-20158364,20158465-20158628,20159471-201595...    26   9.1  

>12_01_0347 + 2658545-2659309
          Length = 254

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 143 LDTRPLQLHSGCLAE--SIFEMRSASNRKNILDIVEDTS 33
           L+TRP  +  GC     S+F  RS S RKN+++ V+D S
Sbjct: 150 LETRPRGVGGGCCPGLGSLFVRRSRS-RKNVVECVDDQS 187


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 80  SASNRKNILDIVEDTSFY 27
           SAS RK I  I+ED+S Y
Sbjct: 156 SASERKKITSIIEDSSIY 173


>07_03_1468 - 26739872-26740912
          Length = 346

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -2

Query: 299 RCTSPWIGTPKL--FVPLVNVNSRKDNDVNNFVFQLF 195
           R   PW    +L  F   ++   R+D  VN F+F LF
Sbjct: 10  RVALPWPVRLRLCVFEAAIDATQRRDGSVNRFLFSLF 46


>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
          Length = 345

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 161 EQNRLNYISHIEKAGKQNC*HRCLSWN*HLPMGRTVSAYQSTG-WCNGIRYQVSIQNY 331
           +Q   N+ +H+++  + NC    ++W+ ++      +  QS+G W   ++ Q    N+
Sbjct: 169 QQYPTNWNNHVKQPTEANCMQSSVNWDNYVSQPPQATVQQSSGNWDMYVKQQDQANNW 226


>01_01_0489 +
           3608720-3608811,3609326-3609431,3609518-3609581,
           3609905-3609965,3610017-3610144,3610236-3610385,
           3610537-3610791,3611060-3611265,3611469-3611696,
           3612161-3612259
          Length = 462

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 198 KLENKIVDIVVFPGIDIYQWD 260
           ++E +I D  +FP ID++ WD
Sbjct: 211 QVEQEIDDQPLFPSIDLWDWD 231


>05_04_0317 +
           20157849-20158364,20158465-20158628,20159471-20159522,
           20159618-20159845,20159928-20160464
          Length = 498

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 73  LADLISKIDSARQPLCSCS 129
           L  L+ K+  ++QP CSCS
Sbjct: 332 LFQLVHKLQCSKQPCCSCS 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,944
Number of Sequences: 37544
Number of extensions: 159201
Number of successful extensions: 365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)