Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P09
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-5|AAG23983.1|  378|Caenorhabditis elegans Serpentine rece...    29   1.2  
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   4.8  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   4.8  
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    26   6.3  
L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>U80028-5|AAG23983.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein129 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +3

Query: 162 NKIVLTI*ATSKKLENKIVDIVVFPGIDIY------QWDEQFRRTNPRAGATVSDTRSPS 323
           NK+++ +  T   L +KI   ++FP + I+      + DE  R+ +  + A  SD+R  S
Sbjct: 212 NKLLIELLETLNALISKISPCLLFPIVTIFLIKEIRKADENRRKISSSSSAKTSDSRKTS 271

Query: 324 RTI 332
           R +
Sbjct: 272 RLV 274


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 13  RVVCT*NDVSSTISNIFFLLLADLISKIDSARQPLCSCSGR 135
           R  C   +    ++N F + +      ID+AR PLC+ S R
Sbjct: 124 RCTCFYMEADKVVTNKFDVSMLPTTDLIDTARMPLCTYSVR 164


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 314 PGIGYRCTSPWIGTPKLFVPLVNVNSRKDNDVN 216
           P  G +CTS    TPKL  P        D+D N
Sbjct: 342 PSRGSKCTSSHHSTPKLLTPSPQYLKDSDDDDN 374


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/60 (18%), Positives = 32/60 (53%)
 Frame = +2

Query: 32   MTYLLRYLIYFSCYLQISFQRSTPQDSHYVAAVVEYQVSRGNVEQNRLNYISHIEKAGKQ 211
            M ++    +  + Y+Q++  +     + YV+ +V+ + +  N+ +  + ++S +EK+  Q
Sbjct: 1026 MAFIGEVAVQLNAYIQVTIPKL---HTRYVSKMVDAEKNDANIREEPVRFLSDLEKSVAQ 1082


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/60 (18%), Positives = 32/60 (53%)
 Frame = +2

Query: 32   MTYLLRYLIYFSCYLQISFQRSTPQDSHYVAAVVEYQVSRGNVEQNRLNYISHIEKAGKQ 211
            M ++    +  + Y+Q++  +     + YV+ +V+ + +  N+ +  + ++S +EK+  Q
Sbjct: 982  MAFIGEVAVQLNAYIQVTIPKL---HTRYVSKMVDAEKNDANIREEPVRFLSDLEKSVAQ 1038


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical protein
            D2021.1 protein.
          Length = 1168

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 257  GRTVSAYQSTGWCNGIRYQVSIQNY 331
            G  +   Q++GWCN I + V+  N+
Sbjct: 990  GGAIHWVQASGWCNNISWNVAPLNF 1014


>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 237 GIDIYQWDEQFRRTNPRAGATVSD 308
           GI+I  W+EQF+R N +  +  S+
Sbjct: 321 GIEIRPWNEQFQRENAKFWSDFSE 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,011,943
Number of Sequences: 27780
Number of extensions: 149853
Number of successful extensions: 425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)