Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P08
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    33   0.027
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   0.76 
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   0.76 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   3.1  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   4.1  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   7.1  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.1  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   7.1  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   9.4  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 32.7 bits (71), Expect = 0.027
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 28  MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 162
           MFGK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 1   MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 157 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 333
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 334 V 336
           +
Sbjct: 500 L 500



 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 313 AGVALDNVNGHGVSLTDTHIPG 378
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 29  CSGRSSFYCLSLCASAFKAD 88
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 320 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 144
           TP + APS      S   ++  + ++ P +  T +P+P + S  S  +P  SLR   L  
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358

Query: 143 SSGSS 129
            S  S
Sbjct: 359 KSAKS 363


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 341 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 195
           P T  S++  V++        S    + T+ ++ PA  + TP P  PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 19  YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 120
           +T++FG IVFL  +     +  R    +E VY I
Sbjct: 93  WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -3

Query: 344 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 189
           +PF   S  P    PS+  LV    P   LT+     + G L+ A  +PS  S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 245 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 141
           S+P  G     P VP + S +A   SLRT  ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 245 SLPAKGTLTPAPEVPSE 195
           SLPA GT TP+P V  +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 435 VVIVVEEIHFAGSCHLVSEPG 373
           +V +  +IHF+G+C+ V+  G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 196 SDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 294
           SDGTS   V V   GN   I S+ G +D+ N Q
Sbjct: 442 SDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQ 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,029
Number of Sequences: 5004
Number of extensions: 34504
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)