Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_P05
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 29 0.35
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 28 0.60
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 1.8
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 2.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 3.2
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 5.6
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 24 7.4
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 9.8
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 24 9.8
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 24 9.8
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 24 9.8
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 24 9.8
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 28.7 bits (61), Expect = 0.35
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 TVGGGIDYMFKD-KIGASATAAHTDFINR*RLLPGRKAEPLQES 291
+VG I Y +D K+ TA+H DF+N LL G L S
Sbjct: 25 SVGRAIRYCKEDGKVEGCETASHVDFLNHIHLLLGNYNNDLASS 68
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 0.60
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 390 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 274
Y ESE+P + S D +S TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 320 FKKFDTPFMKSSWEPNFGFSL 382
F+K++T F+KS + N G SL
Sbjct: 38 FEKYETSFLKSLFNGNLGLSL 58
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 210 CTNLIFEHIVYSATDSVEVGYISDIWHISWWRKP 109
C NL FEH ++ SDI++IS + +P
Sbjct: 257 CANLEFEHNSRKLEKLQKMNVFSDIFYISHYSEP 290
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 3.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 140 SLMYPTSTLSVAE*TICSKIRLVHQRPPLTRTSSIGND-YSLDGKLNLFKSPDTSVDFN 313
S++YPTST S TI S + L RT S+ ++ SLD K F + F+
Sbjct: 711 SILYPTSTASSVANTIASDVDDFGTFNGLQRTVSLHSERASLDKKRPSFHDKNPYFKFS 769
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 5.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 94 VVIVVEEIHFAGSCHLVSEPG 32
+V + +IHF+G+C+ V+ G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 384 ESENPKLGSQEDFMK 340
+S+NP LGS+ED +K
Sbjct: 372 DSKNPVLGSEEDTLK 386
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 215 RPPLTRT-SSIGNDYSLDGKLNLFK 286
RP +R+ S GNDY K NLF+
Sbjct: 559 RPSDSRSRSKFGNDYQSHSKHNLFR 583
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 228 HGLHQSVTITPWT 266
HG +TITPWT
Sbjct: 99 HGAALDITITPWT 111
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 221 PLTRTSSIGNDYSLDGKLNLFKSPDTSVD 307
PL + N Y G N FK PD S+D
Sbjct: 201 PLFPVFTRENFYQKFGSPNCFKKPDGSID 229
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 9.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -3
Query: 98 CRGYRCGRDSLCRQLSPCL 42
C+ Y+C R C Q + C+
Sbjct: 102 CQEYKCDRSHHCSQCNKCI 120
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 355 GGLHE-GCIELLEAGVEIDRGVRTLEEVQLSVQGVIVT 245
GG + GC+++++ EID VR + V + V +T
Sbjct: 535 GGRYSIGCVKVIDPETEIDYAVRVAKSVDCVILCVGLT 572
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,527
Number of Sequences: 5004
Number of extensions: 34561
Number of successful extensions: 105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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