Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O22
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   2.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.2  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   5.2  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   6.9  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   9.1  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   9.1  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.1  

>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 423 LVHIVTGTTRLNALPSRIIP-RKVAG 349
           L H   G+T  N  PSR++P RK+AG
Sbjct: 182 LSHRTPGSTGQNTTPSRVLPGRKMAG 207


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 48   SFLIHLLTINMHTK 89
            SFL+HLL+IN H K
Sbjct: 1189 SFLVHLLSINSHGK 1202


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 562 CCYVVVFVFSPLTCNNSILCNYGGVLRDI 476
           CC V  F+      +N ILC +GG+  ++
Sbjct: 140 CCQVFDFLTLAAVIDNKILCVHGGLSPEV 168


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 71  SKQMDEKRLHVAEMLVLRW 15
           S++ DEK LH+A++L  +W
Sbjct: 62  SREEDEKLLHLAKLLPTQW 80


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 167 FQGSCWEVFERNA--FTHLLSNLTQGKHPRKG*SRRCQAVT 283
           FQGS W   ++NA  +     N+ + K   K   RR Q V+
Sbjct: 416 FQGSLWTQIDKNALDYNDSADNIDEHKDDLKELPRRLQMVS 456


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  NISATCNRFSSICLLSTCIPKY 93
           N+SA CN  S+  + + C P +
Sbjct: 152 NVSAACNNVSAPLIANNCAPSF 173


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 19  LKTNISATCNRFSSICLLSTCIPKYLCLY 105
           L    ++ C      C+LS    KY+CLY
Sbjct: 570 LNKTFTSICYSADGSCVLSAGTSKYVCLY 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,871
Number of Sequences: 5004
Number of extensions: 53830
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)