Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O22
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      27   8.4  

>Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical
           protein BE10.3 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 302 TRVEKRCHY-PLTPSVPPATLRGIIRDGNAF 391
           TR EK C Y P  P+VP   LR   ++GN F
Sbjct: 568 TRPEKLCLYLPAVPTVPRLRLRMFFKNGNFF 598


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   VTSHIHLKTNISATCNRFSSICLLSTCIPKYLCL 102
           V +HIH K+ I    N    +  LS CI  YLC+
Sbjct: 628 VLNHIHFKSYIDIISNFIPQVIFLS-CIFIYLCI 660


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   VTSHIHLKTNISATCNRFSSICLLSTCIPKYLCL 102
           V +HIH K+ I    N    +  LS CI  YLC+
Sbjct: 628 VLNHIHFKSYIDIISNFIPQVIFLS-CIFIYLCI 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,218
Number of Sequences: 27780
Number of extensions: 308430
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)