Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O21
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.50 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  MWLFAVICVIGLLFVLV 92
           +W+F V CV+G + +++
Sbjct: 551 LWIFTVACVLGTVLIIL 567


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 289 TLECNSLHK*IERQNLNI 236
           TL C + H+ ++RQN+++
Sbjct: 324 TLSCWNEHQSLDRQNIDV 341


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 133 T*NSRQEPGGNREKTNTKSSPITHITANNHIVPYILIASI 14
           T NSR EPG N+       S  + I  +  +  + + +S+
Sbjct: 233 TDNSRLEPGTNKNGKFFSRSSTSRIVISESLKHFTIQSSV 272


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 388 SVFDLH-QHYPVSTIHTFPKKV 326
           +V  +H QHY ++ + T  KKV
Sbjct: 2   NVLHIHYQHYHITPVFTKQKKV 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,316
Number of Sequences: 438
Number of extensions: 2945
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)