Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O20
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   2.6  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   2.6  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    23   6.1  

>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  ENFTDTPTHLMLRHYDIRWISLHQCIYRTIE 116
           E FTD+P +L+   YD R ISL      TIE
Sbjct: 432 ETFTDSPIYLISYFYD-RMISLGMPSTFTIE 461


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 83  FSTSMHLPNYRALVSIKTFF*MSF*GIRIQMLLVNLYLI 199
           F  S H+P+   L+S+ TF   ++   R+Q ++  LY +
Sbjct: 243 FRESNHIPSLLKLLSVDTFVDGTWDTSRVQCVIEALYAL 281


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 92  M*RNPSDIIMTKHKVSWSVSKIFKFGKLS 6
           M R P+D +M      W++  +  FGKL+
Sbjct: 872 MDRPPNDTLMASLYELWTLGALDNFGKLT 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,016
Number of Sequences: 5004
Number of extensions: 16723
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)