Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O20
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525...    27   1.6  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    25   6.5  
01_03_0236 + 14061850-14062062,14062156-14062403,14062484-140628...    25   6.5  
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566...    25   8.7  
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940...    25   8.7  

>01_06_0179 +
           27250706-27251593,27252172-27252462,27252510-27252575,
           27252732-27252871,27254709-27254814,27254898-27254990,
           27255398-27255487,27256403-27256525,27256708-27256781,
           27256878-27256932,27257087-27257322,27257959-27258088,
           27258170-27258272,27258428-27258525,27258973-27259038,
           27259252-27259419
          Length = 908

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 69  DIRWISLHQCIYRTIEHWSALKLFFK 146
           D RW  L  C   T+ +W AL+ F K
Sbjct: 767 DKRWYWLKSCALATVGNWDALEKFSK 792


>09_06_0244 +
           21822811-21823246,21823337-21823468,21823949-21824037,
           21824135-21824224,21825033-21825603,21826097-21826734,
           21826978-21827098,21827223-21827337,21828234-21829723,
           21829830-21829901,21830151-21830196,21830413-21830515,
           21830591-21830674,21831035-21831475,21831651-21831746,
           21831896-21832045,21832131-21832274,21832414-21832527,
           21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 133 NFFLNEFLGNKNTNATCQFIFDHLNSDE 216
           N F++ FL +   N+T + I D LNS+E
Sbjct: 495 NSFISLFLSHLERNSTSESIDDVLNSNE 522


>01_03_0236 +
           14061850-14062062,14062156-14062403,14062484-14062811,
           14062930-14063175
          Length = 344

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 90  HQCIYRTIEHWSALKLFF 143
           H+ +YR+I H   +KLFF
Sbjct: 311 HEAVYRSIGHDEFMKLFF 328


>05_04_0376 -
           20754386-20755392,20755683-20756320,20756433-20756627,
           20757730-20757795,20757942-20758007,20758402-20758445
          Length = 671

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 88  YINAFTEL*STGQH*NFFLNEFLGNKNTNATCQFIFDHLN 207
           ++ A  E+ +TG +   F +  +  + +N T Q + DH+N
Sbjct: 452 FLFAMPEITATGNNATLFNSGVMVIEPSNCTFQLLMDHIN 491


>01_06_1550 +
           38191957-38192054,38193084-38193284,38193456-38194090,
           38194398-38195419
          Length = 651

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 88  YINAFTEL*STGQH*NFFLNEFLGNKNTNATCQFIFDHLN 207
           ++ A  E+ +TG +   F +  +  + +N T Q + DH+N
Sbjct: 427 FLFAMPEITATGNNATLFNSGVMVIEPSNCTFQLLMDHIN 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,437,617
Number of Sequences: 37544
Number of extensions: 80308
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)