Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O19
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.54 
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.94 
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    28   1.6  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   2.2  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   2.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   5.0  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   5.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   5.0  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   6.6  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   8.7  

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 380 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 273
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 119 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 21
           +L  + L+ ++WV VT   +   G YGY  LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 504 KRIKNLVDSNSVGQ*HTSVSS*IAIYFKGSWKDKFDKELTQDRPFHVNK 650
           K  KN+  +N++ Q +T+ SS  + Y   + +  +D+E+ +  P   NK
Sbjct: 75  KNKKNVTPNNNIRQKNTATSSHPSFYIANNKQKGYDEEMYKVNPASRNK 123


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = +3

Query: 102 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 260
           N N Q  A    + + KN   S++    S     + L IAS   +H+ +   I       
Sbjct: 59  NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118

Query: 261 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 383
            +    +   ++  D+ +K+R +  VDL+   K      NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = +3

Query: 294 FTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFA-----VVSRDVFNSEVQNLNFGKNE 458
           F   N K +  + +D     K +  N  +++D  +     ++S   F+   +N N G NE
Sbjct: 329 FIKNNDKTKFHQNIDWIALEKYFEVNALDISDSESEDLSDILSDSEFSIGNRNKNIGNNE 388

Query: 459 EAANIINTWVEEQTSKRIKNL 521
            +A I +   EE+ +  + +L
Sbjct: 389 YSAQISSDPAEEEIANAMHSL 409


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +3

Query: 369  NGNELNDQFAVVSRDVFNSEVQ--NLNFGKN--EEAANIINTWVEEQTSKRIKNLV 524
            N   +ND  +   +D +   V   N+++ +N  EEA NI+     +Q SK ++++V
Sbjct: 906  NAEGINDSGSFTLKDEYFDYVDPFNIHYSRNQREEAENILRRRYSKQHSKHLESVV 961


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   KHESHRQHEDYNNHI 46
           +H SHR+HE Y  H+
Sbjct: 148 RHGSHRRHEPYRTHL 162


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 431 HFRIKHISGHNSKLII*FI 375
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 466 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 314
           A  +FL  F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 554 CVLLSNGIRIHQIFDTFTG 498
           C+LLS    +H I D F+G
Sbjct: 221 CILLSTRANVHYILDAFSG 239


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 270 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 440
           ND + +A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 26/120 (21%), Positives = 52/120 (43%)
 Frame = -1

Query: 602 VFPTSLKVNCNLRGHTCVLLSNGIRIHQIFDTFTGLFFNPSINNVSCFFIFTEI*VLHFR 423
           V+  S   N  ++ +   L     R H+       LFF   I+  SCFF+     + +  
Sbjct: 265 VYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEISPGSCFFLPHGARIYNTL 324

Query: 422 IKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVVIRKVDSLKKL 243
           +K++    SK     +   N+Y ++ ++ +    +Y     SE  FS+ + ++  +LK +
Sbjct: 325 LKYMRYQYSKRGYQEVITPNMYNVNLWKTSGHWNNY-----SENMFSFDIEKEKYALKPM 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,521
Number of Sequences: 5004
Number of extensions: 60009
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)