Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O15
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    74   1e-14
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   2.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   2.2  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   3.8  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   3.8  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   5.0  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 39/100 (39%), Positives = 52/100 (52%)
 Frame = +2

Query: 122 IDLAYASYESTGDVENSRPPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDS 301
           + LA+  Y +T       PP++I HGLLGSK NW S++K       R + ++D R HGDS
Sbjct: 6   VKLAFEKYSAT---VAKHPPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDS 62

Query: 302 RHSLQHTYIHMAHDVMXXXXXXXXXXVSIMGHSMGGRTAM 421
                 +Y  MA D             SI+GHSMG +TAM
Sbjct: 63  PCVAPLSYSAMALDAFQFMKDHKLDKASIIGHSMGAKTAM 102


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
 Frame = -3

Query: 291 WLRASTLITFLPVVLCIALLILFQLFLEPNKPCN-----------MTRGGREFSTSPVLS 145
           WL+      + PV+     L+L++ F  PN P +           ++R  R+  TSP++ 
Sbjct: 20  WLQPEFFSKYYPVLAVDGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKTSPIVV 79

Query: 144 *DA*ARSIVSAFSDVELACLKT*FEKILEQTQ-RDLNVFSLCNLIRCIL 1
            D    +   A    + + + +   +I+ Q Q     ++ LCNL  C++
Sbjct: 80  FDNLKPNDFKAEEHEKRSLISS---QIVNQRQVVQEQMYFLCNLKNCLI 125


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 11  LIRLHNEKTFKSLCVCSRIFSNYVFRHASSTSENAETID-LAYASYESTGDVENSRPPLV 187
           L  + NE+  K +  CS      VF H  ++  ++ T D L     E   D +    PL+
Sbjct: 81  LYAVDNEEVKKDVISCSCTIYPLVFLHCCTSPNDSSTWDTLTKLKNEIINDFDKGNKPLL 140

Query: 188 I 190
           I
Sbjct: 141 I 141


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 36  RSNLFVSVLEFFQIMFLDMQAQRQKTRRRSISLMH 140
           +S LF + L  F I+FL ++   ++ R+R I+  H
Sbjct: 277 KSVLFFAFLAAFAILFLCLRVVFKRRRKRGIAASH 311


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 447 KSEQSSDKTIAVRPPMLCPI 388
           + +Q+S+ T AV+PP  CP+
Sbjct: 108 REKQNSEATPAVQPPATCPM 127


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 176 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNH 292
           P  +  HGL+GS+N ++S+   I  + G  V++++ R++
Sbjct: 117 PVFIFSHGLVGSRNVYSSLCGTI-ASYGIVVLAMEHRDN 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,724
Number of Sequences: 5004
Number of extensions: 36977
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)