Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O14
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       28   4.4  
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       28   4.4  
Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
            protein ZK1251.9 protein.
          Length = 1701

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 83   SSSYIPSSLFITPVVD-VRPQTPGDCSDTYVYVADVSGFGLLIVDVARNQ 229
            +S   P  L I+P    +RP TPG+ S  Y  + D++    ++ D  RNQ
Sbjct: 967  TSGAFPKKLMISPARQKLRPLTPGESSSGYRPIKDLNS---IVTDYFRNQ 1013


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical protein
            ZK1251.9 protein.
          Length = 1701

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 83   SSSYIPSSLFITPVVD-VRPQTPGDCSDTYVYVADVSGFGLLIVDVARNQ 229
            +S   P  L I+P    +RP TPG+ S  Y  + D++    ++ D  RNQ
Sbjct: 967  TSGAFPKKLMISPARQKLRPLTPGESSSGYRPIKDLNS---IVTDYFRNQ 1013


>Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical
           protein ZK265.4 protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
 Frame = +2

Query: 377 HALASTTENVVRTSVLRNRTYIENSELNSNDVRK-FSGERPNQSAAEAMDCNGRMSFGLM 553
           HAL +  +      V    T     +L    V+  F   R      E  DC G     L 
Sbjct: 73  HALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAKFRRQEKQDCQGEEKHSLK 132

Query: 554 DPPSMWSWNSNTE 592
           D    WSW S  +
Sbjct: 133 DTMPSWSWMSENK 145


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 556 IHQTKRHSAVTVHRFRCRLIWTFP*KFSDIIRIKFRVFYVCAVS*YASSHYVLCGRRKR 380
           IH   R  AV++  FRC    T   K    ++   +V Y C    + SS   +C  R+R
Sbjct: 100 IHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSS---ICPERRR 155


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 556 IHQTKRHSAVTVHRFRCRLIWTFP*KFSDIIRIKFRVFYVCAVS*YASSHYVLCGRRKR 380
           IH   R  AV++  FRC    T   K    ++   +V Y C    + SS   +C  R+R
Sbjct: 131 IHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSS---ICPERRR 186


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 556 IHQTKRHSAVTVHRFRCRLIWTFP*KFSDIIRIKFRVFYVCAVS*YASSHYVLCGRRKR 380
           IH   R  AV++  FRC    T   K    ++   +V Y C    + SS   +C  R+R
Sbjct: 131 IHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSS---ICPERRR 186


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 556 IHQTKRHSAVTVHRFRCRLIWTFP*KFSDIIRIKFRVFYVCAVS*YASSHYVLCGRRKR 380
           IH   R  AV++  FRC    T   K    ++   +V Y C    + SS   +C  R+R
Sbjct: 131 IHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSS---ICPERRR 186


>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 323 FGMTLSPYRAGIDRSLY-FHALASTTENVVRTSVLRNRTYIENSELNS 463
           F MTL  YR  +D+S Y +    + T +V+  SV  +  Y+   +L +
Sbjct: 182 FAMTLRRYRDVLDKSCYNYEEHLNHTNSVLVVSVYVSNIYVNRKQLET 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,337,027
Number of Sequences: 27780
Number of extensions: 297966
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)