Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O09
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0648 + 25873779-25874279,25874418-25875548                       26   3.6  
01_06_0464 + 29571791-29572240                                         25   6.3  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    25   8.3  

>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 136 VPGCAGKRVNLQLILMEPQVLWSRYRXLETKITSSVLLAPLI 261
           V  C  K    QL++   Q    R+R ++++I S +LL P+I
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVI 127


>01_06_0464 + 29571791-29572240
          Length = 149

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 RVRRQAGELTINSDGTSGAMVKVPXTGNENHKLSA 245
           RVR +AG L    +GT GA   VP  G      SA
Sbjct: 74  RVRHRAGLLRAGEEGTGGA---VPGVGRRRGSTSA 105


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 153 AGAPWNWSTAPAVPRTVRC 97
           AG PW W  +PA     +C
Sbjct: 408 AGGPWTWRESPASRAMQKC 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,960,774
Number of Sequences: 37544
Number of extensions: 88793
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)