Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O08
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    31   0.098
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    29   0.69 
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    27   1.6  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   8.5  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 31.5 bits (68), Expect = 0.098
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 601 NLPAQAMGHRIRVMLYPSRI 542
           NLPA+  G  +RVMLYPS I
Sbjct: 89  NLPAKTFGSSLRVMLYPSNI 108


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 601 NLPAQAMGHRIRVMLYPSRI 542
           NLP +  G  +RVMLYPS +
Sbjct: 89  NLPPKTFGASLRVMLYPSNV 108


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 286 LYLTF*QFDALSGFKVSNVRYVAEALRYV 200
           +YLT     ++SG   SNVRY AEA+  V
Sbjct: 406 IYLTKNGRISISGLNTSNVRYFAEAINAV 434


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 499 VFILHLSLLKQEDFRSWKDT 558
           + I  L +LK+EDF  W D+
Sbjct: 383 LLITKLLILKEEDFEEWTDS 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,026
Number of Sequences: 5004
Number of extensions: 43271
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)