Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O08
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451     30   1.6  
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     29   2.1  
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           29   2.1  
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740...    27   8.7  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 601 NLPAQAMGHRIRVMLYPSRI 542
           NLP  +MG ++RV +YPS I
Sbjct: 93  NLPPASMGRKVRVFMYPSSI 112


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 601 NLPAQAMGHRIRVMLYPSRI 542
           NLP  +MG ++RV +YPS I
Sbjct: 92  NLPPTSMGKKVRVFMYPSSI 111


>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 237 RTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSACCGQYNTECSPAGHFLIG 85
           ++F +L K CG  HSP  G ++  +  +   +A          P G F  G
Sbjct: 143 KSFASLPKDCGGGHSPRPGELAKAMSCAAAATATASAAGGMSVPCGVFFYG 193


>04_04_1060 -
           30473509-30473619,30473815-30473850,30474063-30474095,
           30474246-30474335,30474466-30475215
          Length = 339

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +3

Query: 93  ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCATYRSA-----SATYRTFETLKPES 257
           ++AR   T CCT H   S+H+      + TH    A   ++     S  +R   T  P+ 
Sbjct: 27  DSARHKATNCCTRHGCSSKHLA--GKDKQTHRAATAAKEASETPRRSQIFRKPSTRTPQG 84

Query: 258 ASNCQNVKYN 287
           ++   N+  N
Sbjct: 85  STATDNISRN 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,182
Number of Sequences: 37544
Number of extensions: 267283
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)