Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_O07
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 31 0.11
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.15
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.78
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.4
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 28 1.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.4
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 3.1
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 3.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 4.2
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 26 5.5
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 5.5
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 25 9.6
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.6
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 9.6
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.6
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Frame = -3
Query: 520 PNLYSNLSGVSNSAPSSIF----QEPVAPQPVHTPTKLTGKG-SGSDQ------DMNGID 374
PN + + + + +P + Q+P+ P + + + TG SGS Q D+N +
Sbjct: 67 PNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNFNTNDLNQMT 126
Query: 373 SPSRPADIMPLSQRTQKPRNSPAF 302
S S + + P+ Q QKP N F
Sbjct: 127 SSSNLSTVTPIKQDHQKPMNLQGF 150
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -3
Query: 559 PRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNG 380
P+++N+S+ N+ + S V+ P + +P P P + T+ TG S +
Sbjct: 248 PQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRP-PTNASTRSTGTSSSMAHSYDS 306
Query: 379 IDSPSRPAD 353
SPS P+D
Sbjct: 307 PPSPSSPSD 315
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.78
Identities = 23/92 (25%), Positives = 38/92 (41%)
Frame = -3
Query: 640 SQPPRIISYIGSTSAGPEVRQTWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQ 461
S P + S + TS+ + T+ G S+SS+ + YS+ + S SSI
Sbjct: 666 SSPAYVSSTVSYTSSSVDSSSTYNSTG---SSSSDSQSFSGTTYSDPTTTITSEVSSILS 722
Query: 460 EPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPS 365
P + Q + + +G SG + I S
Sbjct: 723 SPTSMQSSVSRPQSSGDASGFNTIFTSISQSS 754
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 490 SNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQ-DMNGIDSPSRPAD 353
SN I ++ P+ H+ ++ +G GS SD+ D + +S S D
Sbjct: 79 SNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSED 125
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -3
Query: 496 GVSNSAPSSIFQEPVAPQ-PVHTPTKLTGKGSGSDQDMNGID-SPSRPADI-MPLSQRTQ 326
GV ++ P+S+ +APQ + TP +G D+D I S + P I M S R
Sbjct: 93 GVYHTRPASLHSRTMAPQHTILTPRLSATEGKDDDEDELVISTSNTAPTYISMIESSRAS 152
Query: 325 KPRNSPAFKIEGVSI 281
+ A I G+SI
Sbjct: 153 STHSGTAPSIMGMSI 167
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = -3
Query: 592 PEVRQTWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTG 413
P Q + P + P+A P++ L VS+ P P PQP T L
Sbjct: 1024 PTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPS 1083
Query: 412 KGSGS 398
+ S
Sbjct: 1084 SSAVS 1088
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 628 RIISYIGSTSAGPEVRQ-TWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPV 452
+++S G+TSA + + L G + +++PAA + ++ S+ +E
Sbjct: 117 KVLSLGGNTSAPKSTKPISISLGGTKAPTTTKPAAPAAQSKTETPAPKVTSESTK-KETA 175
Query: 451 APQPVHTPTK 422
AP P TPTK
Sbjct: 176 APPPQETPTK 185
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 607 STSAGPEVRQTWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSS 470
STS+G E++ G +S+S PA++ S++S +S+ SS
Sbjct: 726 STSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSS 771
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 391 PGRIPNPSPLTSLAY 435
P IPNPSPL S AY
Sbjct: 161 PSAIPNPSPLFSSAY 175
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -3
Query: 499 SGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNGID----SP---SRPADIMP 344
SG SNS+ SS+ PV+P+ + L S MN ++ SP SR A I P
Sbjct: 409 SGSSNSSGSSLKSAPVSPRTAAAQSLLPNSVVSSINGMNSVNFSTISPPPLSRSASISP 467
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 463 QEPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPSRPADIMPLSQRTQKPRNSP 308
Q+ APQ P G+ S Q M+ D PS P QRT P N+P
Sbjct: 288 QQKQAPQNAFFPNPQGNVGAQSLQSMSPQDQPSTQQQ-QP--QRTAAPPNNP 336
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -3
Query: 400 SDQDMNGI---DSPSRPADIMPLSQRTQKPRNSP 308
SD ++ G+ D+ +PA+ +PLS+R+ P +P
Sbjct: 30 SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -3
Query: 550 SNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNGIDS 371
S ++E + + P+L S L S AP+ F +P P L K S D S
Sbjct: 824 STNNETSDSKPSLKSPLFNFSADAPTFTFNKPSETPPFSFNKPLVEKESKQDVSDTSDRS 883
Query: 370 P 368
P
Sbjct: 884 P 884
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 415 PLTSLAYVPAGALPVLGKSKMELNSILRTN 504
PLT Y P+GA L + LNS +R N
Sbjct: 410 PLTDCGYGPSGASDGLCELSAYLNSSVRVN 439
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 433 TPTKLTGKGSGSDQDMNGIDSPSRP--ADIMPLSQRTQKPRN 314
+P K++ K S + +++NGI+ + P + +PL P N
Sbjct: 519 SPVKVSTKNSNTTENLNGINESNMPMLQNGLPLRTSGDHPSN 560
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 406 SGSDQDMNGIDSPSRPADI-MPLSQRT 329
SGS D+ I+SP+ PA+ P + RT
Sbjct: 82 SGSSSDLLNIESPASPAEASSPFTVRT 108
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 559 PRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNG 380
P NSN++ P+ ++ S+ SN PS+ Q + P P G S Q +
Sbjct: 240 PPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLF-SPTARPLTARKLGFASSQTKSA 298
Query: 379 IDS 371
+ +
Sbjct: 299 VSN 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,816
Number of Sequences: 5004
Number of extensions: 71878
Number of successful extensions: 235
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -