Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_O07
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 36 0.037
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 33 0.26
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 32 0.46
03_04_0029 - 16610182-16611753 31 0.61
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 31 0.81
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313... 30 1.4
02_05_0977 - 33239887-33240566,33241010-33241985 30 1.4
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 29 3.3
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 29 3.3
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 28 5.7
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 28 5.7
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 28 5.7
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 7.5
02_05_1008 - 33461225-33462334 28 7.5
02_02_0136 + 7104633-7105247 28 7.5
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273... 27 9.9
07_01_0041 - 332393-333772 27 9.9
02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814 27 9.9
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 27 9.9
01_07_0037 + 40657449-40658010,40658567-40658901 27 9.9
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 27 9.9
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.5 bits (78), Expect = 0.037
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Frame = +3
Query: 96 QYQFFPLSSGSVQFKVRAANDAHVALTMGPQESEPMYEIMIGGWGNSKSVIRRNKTKPDK 275
+++F G + F+ A ND V L Q Y + + ++ ++ K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 276 VEIETPSILN--------AGEFRGFWVRWDSGIIS--AGREGESIPFISWSDPEP-FPVN 422
+E++ ++++ + F+ +W+ G+IS GR + W DP+P V
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQ 139
Query: 423 FVGVCTGW 446
+VG+ + W
Sbjct: 140 YVGL-SSW 146
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 32.7 bits (71), Expect = 0.26
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = -3
Query: 622 ISYIGSTSAGPEVRQTWQLWGPRNSNSSEP--AAAGPNLYSNLSGVSN-SAPSSIFQEPV 452
+S STSA P L G NS P +A GP N + + ++ +S+ P
Sbjct: 664 LSCAPSTSA-PSPSVVGLLQGSMNSRQDHPMSSANGPYTSGNSAAIPKVNSTTSLQSTPS 722
Query: 451 APQPVHTPTKLTGKGSGSDQDMNGIDSPSRPADIMPLSQRTQKPR 317
P PT + Q+ N + SP+ +++ P+ +P+
Sbjct: 723 TSFPSPVPTTSNNNMMPAPQNTNQLSSPTASSNLPPMQPPATRPQ 767
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 31.9 bits (69), Expect = 0.46
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -3
Query: 553 NSNSSEPAAAGPNL---YSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMN 383
NS+SS AAA P L V+ +AP S P PQPV T TK G G+ S N
Sbjct: 604 NSSSSSAAAAAPALPPPEHAEPAVTVAAPISQTPPPPPPQPV-TTTK-NGNGTSSTNGAN 661
Query: 382 G 380
G
Sbjct: 662 G 662
>03_04_0029 - 16610182-16611753
Length = 523
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -3
Query: 547 NSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAP---QPVHTPTKL----TGKGSGSDQD 389
+++ PAAA P++ S + + PSS ++ +P P HT K G G GSD+D
Sbjct: 70 STAAPAAASPSIASPAASSPSDVPSSSSKKRKSPAHRAPGHTGGKKGGGGKGGGGGSDRD 129
Query: 388 MNGIDSPSRPADI 350
M + P +
Sbjct: 130 MRWAEQLLNPCAV 142
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 31.1 bits (67), Expect = 0.81
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Frame = -3
Query: 643 FSQPPRIISYIGSTSAGPEVRQTWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIF 464
FS P G+ SAG E Q ++++G + + +P+ PN + S + + I
Sbjct: 1268 FSGRPSGFPSPGNLSAGAEFVQPYKMYGQQLGVTMQPSVPDPNFFQFFQHPSLLSYAGIN 1327
Query: 463 Q-EPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPSRPADIMPLSQRTQKPR----NSPAFK 299
Q + P+ + G + S + P+ P+D QR Q PR NSPA +
Sbjct: 1328 QYNTMGPR-----VSVVGNPADSFDPQKVLSQPAYPSD-----QRLQLPRTGIYNSPAAR 1377
Query: 298 IEGVS 284
G +
Sbjct: 1378 RGGAA 1382
>05_01_0397 -
3129679-3130144,3130655-3131104,3132215-3132273,
3133136-3133305,3134655-3134771,3134980-3135166
Length = 482
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 565 WGPRNSN-SSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTP 428
W + S+ +SEPA A L+ GV S+P + E + + +HTP
Sbjct: 434 WSSQQSHGTSEPAPAPRRLFGQWIGVGRSSPENRSPEGSSYRQMHTP 480
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Frame = -3
Query: 610 GSTSAGPEVRQTWQLWGPRNSNS--SEPAAA-GPNLYSNL--SGVSNSAPSSIFQEPVAP 446
GS+S P R + W ++ S PA+ P+ L SG S +I P
Sbjct: 195 GSSSPAPPSRAAFPSWVTKHDRHLLSSPASTIAPDAVVALDGSGTHTSISDAIAAVTAPP 254
Query: 445 QPVHTPTKLTGKGSG 401
P H PT G G G
Sbjct: 255 PPAHHPTASGGGGGG 269
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = -3
Query: 550 SNSSEPAAAGPNLYSNLSGVSNSAPSS--IFQEPVAPQPVHTPTKLTGKG---SGSDQDM 386
S+S P G N + ++SAP S + ++P + + +P G S
Sbjct: 38 SSSPSPQTEGEGSNPNPNAAASSAPPSPPLAEDPAGRRTLASPYPSPGLPPLPSRRSSSP 97
Query: 385 NGIDSPS--RPADIMPLSQRTQKPRNSP 308
I SPS RPA MP + + PR P
Sbjct: 98 FAISSPSPLRPAAAMPPADLPRPPRRGP 125
>01_05_0808 -
25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 547 NSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPT 425
N E A G + L+ S+S+ S +P+A Q +HTPT
Sbjct: 322 NKKESKANGEKGSTGLTFPSSSSVKSASSDPMADQNLHTPT 362
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 315 FRGFWVRWDSGIISAGREGESIPFISWSDPEP 410
+R WV W +I AG G F+ PEP
Sbjct: 200 WRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 346 ALYLLVARVNQSHSYPGRIPNPSPLTSLAYVPAGALPV 459
A+YL+++++++ YP + +P P L + +PV
Sbjct: 205 AIYLILSKLSEDVHYPPNLSSPFPYAGLGFPSYPGVPV 242
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 502 LSGVSNSAPSSIFQEPVAPQP--VHTPTKLTGKGSGSD 395
LS V PS +EP +P P PT ++G G G D
Sbjct: 34 LSAVIVPDPSPELREPTSPSPSLAPAPTPVSGAGGGDD 71
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 313 NSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 408
N+ V+GF+G V LLVARV Q YP +P+
Sbjct: 236 NAKVTGFLGGVNWALLVARVCQ--LYPNAVPS 265
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 544 SSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGS 398
SS P++ + S+L GV + P+S+ P AP P+ ++ GSG+
Sbjct: 56 SSAPSSTSSSGSSSLGGVP-TPPNSVGSAPPAPPPLSELERVRRIGSGA 103
>02_02_0136 + 7104633-7105247
Length = 204
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Frame = -3
Query: 592 PEVRQTWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTG 413
P R+ + W + A AG + +S + P++ VA + + G
Sbjct: 95 PRARRQQRRWPQQQQCRHTSAGAGAGVVV-VSKHGEAEPTAAAATDVAARERGGGDGVDG 153
Query: 412 KGSGSDQDMN-------GIDSPSRPADIMPLSQRTQKPR 317
G+G D + + P+RP ++PL+QR + R
Sbjct: 154 AGAGGQHDRDVVHQWRPAVGGPARPPRLLPLAQRAEHHR 192
>11_04_0195 -
14725553-14725571,14725988-14726079,14727214-14727335,
14727588-14727597,14727798-14727896,14728046-14728612
Length = 302
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -3
Query: 544 SSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPS 365
SS P A + + + VS + S EP P+P P+ L S S D G+ PS
Sbjct: 80 SSAPLPALRRVLAGAASVSCFSHSDQPPEP-PPEPTSAPSPLPEPNSTSASDGAGVVCPS 138
Query: 364 RPADIMPLS 338
P+S
Sbjct: 139 ARPTASPIS 147
>07_01_0041 - 332393-333772
Length = 459
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 640 SQPPRIISYIGSTSA-GPEVRQTWQLWGPRNSNSSEPAAAGPN 515
S+PP + STS P + Q + G +S+SS PAAAGPN
Sbjct: 104 SRPPA--DHTSSTSVVAPLLMQARDILG--DSSSSAPAAAGPN 142
>02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814
Length = 472
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -3
Query: 553 NSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNGID 374
+S+SS AAA SN S P+ + ++P P P K + +G + GI
Sbjct: 69 SSSSSSSAAATSASGSNAKRRSRREPNDLIKKPPLPGPGSDQGKASMRGLYNSSRGRGIA 128
Query: 373 SPSRPADIMPLSQRTQKPRN-SPAFKI 296
+ + + + + + + N SPA K+
Sbjct: 129 TQFQ-SSVFSMEEILRATNNFSPALKV 154
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 598 AGPEVRQTWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIF--QEPVAPQP 440
A P V + +S + +PAAAGP ++ + ++ AP + F Q P A P
Sbjct: 539 ANPSVHPEQAVPSYVSSQAPQPAAAGPQTHAAPASFASQAPPTSFASQAPQAGAP 593
>01_07_0037 + 40657449-40658010,40658567-40658901
Length = 298
Score = 27.5 bits (58), Expect = 9.9
Identities = 25/102 (24%), Positives = 36/102 (35%)
Frame = -3
Query: 610 GSTSAGPEVRQTWQLWGPRNSNSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHT 431
G P + W + G + P++ +Y L G +AP S F E +A
Sbjct: 113 GEAPPPPRLESFWDMRGEQRRARQLPSSFDREVYDALVGGHGAAPPSDFGEDLA------ 166
Query: 430 PTKLTGKGSGSDQDMNGIDSPSRPADIMPLSQRTQKPRNSPA 305
G G D D + P P +MP+S R A
Sbjct: 167 ------DGDGVDAD----ELPPPPLMVMPISATVSAKRGGAA 198
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 307 PVNSVVSG-FVGIVALYLLVARVNQSHSYPGRIPNPS 414
PV +SG + + L L+ +R+N++ S+P R NP+
Sbjct: 738 PVVGKISGPTIACIPLRLVFSRINEALSFPVRSENPT 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,892,671
Number of Sequences: 37544
Number of extensions: 511755
Number of successful extensions: 1631
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -