Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O06
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    27   1.4  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   1.4  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   3.3  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   4.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   7.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.6  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 401 RFANQILSYGAELDSDHPGFTDPVYRARRKY 493
           R  +  +SY  E +SD P F D  +  RR+Y
Sbjct: 15  RSGDTFVSYEIETESDLPVFEDKKFSVRRRY 45


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 332 ISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAE-LDSDHPGFTD 466
           I+RNY D  + +PW  R + + D      L +  E LD DH G  D
Sbjct: 512 ITRNYLDWITQLPWGKRSVENFD------LDHAKEVLDRDHYGLKD 551


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
 Frame = -3

Query: 285 PKSPAPCSHSTINS*PGRLADDLDSI*LRFTPCEQNILRNLAKEPASS-----GVAGENN 121
           P  P P + S +N       +D DS     TP  + +  NL  E   S       AG ++
Sbjct: 274 PPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKVSENLGSETRESLQGAKPAAGAHS 333

Query: 120 SHVDLVESRPSRM*LPPSINLGLSDGEIVG 31
           S   L + +PS     PS + G S  E  G
Sbjct: 334 SDNALEQIKPSYS-ADPSSSTGASLTESPG 362


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 266 HGAGDFGTALEELKKNVGYLNIISRNYKDN 355
           H   +F    EE +K  GY N + RN +DN
Sbjct: 609 HFVAEFLGETEEAEKLAGYENAMLRNLEDN 638


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 44   PSDKPKLMEGGNYIREGRDSTKSTWLLFSPATPDEAGSLARFLS 175
            PS K  + E  + I E + + K+T L++    PDE  S ARF +
Sbjct: 1201 PSGKSMVDELNSDITELKTTLKTTLLMYGE-NPDEPTSSARFFN 1243


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 29  KPTIS---PSDKPKLMEGGNYIREGRDSTKSTWL 121
           KPT++   P D+PK   GG  IR+ ++    T L
Sbjct: 362 KPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTEL 395


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 365  RQICCL-YNFLI*YSSSRHFFLILQEQCRSHQH 270
            + IC L  +FL  +S   H FLIL +  + H H
Sbjct: 1006 QSICSLGSSFLSKFSQKFHGFLILHDNLKDHIH 1038


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,567
Number of Sequences: 5004
Number of extensions: 45706
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)