Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O05
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0116 - 934801-934949,935745-935854,935930-936055,936439-93...    29   1.6  
08_01_0784 + 7600691-7601055,7601530-7601765,7601896-7602068,760...    27   6.4  
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361     27   8.5  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    27   8.5  
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817...    27   8.5  

>08_01_0116 -
           934801-934949,935745-935854,935930-936055,936439-936526,
           936638-936758,936848-936926,937093-937156,937240-937445,
           937676-937715,937748-938009
          Length = 414

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +3

Query: 66  PCHWSDGRPIENYFLDAANELIRADRRAKEYCRSNTRHRIKYLFGENEFKMAINCSGFRK 245
           P HW  G    NYF  A  +L    R    Y  +N RH I + +   +        G   
Sbjct: 294 PDHWKFGTEGNNYFRHATRQLYAVTRDLATYISAN-RH-ILHKYSNEDVSFGSWLIGLDV 351

Query: 246 KHYDVKS 266
           +H D +S
Sbjct: 352 EHVDERS 358


>08_01_0784 +
           7600691-7601055,7601530-7601765,7601896-7602068,
           7602344-7602430,7602538-7602605,7602732-7602849,
           7602983-7603042,7603135-7603257,7603377-7603448
          Length = 433

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 102 SSQ*VYRHSNGMEVVCMPPPLPGSQRAIRDGTF 4
           +S+ + + SNG +++C   PLPG++    DG F
Sbjct: 247 TSRRIMQFSNG-QLICTQAPLPGARVVYIDGAF 278


>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
          Length = 504

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 228 CSGFRKKHYDVKSRNRVVMISAHNCDSGQMFSDV 329
           CS     H D K+  +      H+CD G++FS V
Sbjct: 149 CSKAYAVHSDYKAHLKTCGTRGHSCDCGRVFSRV 182


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 51  ACRPPPCHWSDGRP 92
           +CRPPPCH  D RP
Sbjct: 823 SCRPPPCHHHD-RP 835


>02_02_0239 -
           8177152-8177445,8177821-8178207,8178717-8179715,
           8179799-8179953,8180725-8180812,8180901-8181004,
           8181327-8181549,8182251-8182335,8182425-8182816,
           8182852-8183097
          Length = 990

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 296 QLRFRADVLRCSSRTAVSQRLPF 364
           +LR RAD L CSSR A    + F
Sbjct: 359 ELRIRADDLHCSSRKAAKHYIEF 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,050
Number of Sequences: 37544
Number of extensions: 312608
Number of successful extensions: 895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)