Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_O04
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   0.44 
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    28   0.77 
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.1  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    26   4.1  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   4.1  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   5.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   7.2  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   9.5  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 216 VSLSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 97
           + L++ Q +++G SYVL +DP      F +  NG  R  T
Sbjct: 287 LDLAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 87  IYTR*QLCHRRYVFAEKSIVPS-AGQMVRRTRTRVNFTAKRTTTHSTMTIVKNTACEVGI 263
           IYT    C  R +F + +++P   G + + T  ++      T +   + +VK+TA +V I
Sbjct: 164 IYTSLDECKSRAIFTDPNLIPKLLGPLKQSTWVKL-IVCSSTPSEDLVELVKSTAPDVEI 222

Query: 264 PCY 272
             Y
Sbjct: 223 ITY 225


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 126 IHNGGGRAV-TEYICAAAIRRIPSLFILCINTEP 28
           +H G G    ++ +C AA R I +LF+  ++ +P
Sbjct: 486 VHRGTGSITDSQALCIAAARSITNLFVESVDLQP 519


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 212 DTQHYDNREKHRMRGGHPLL 271
           D  +Y NR   +MRG  PLL
Sbjct: 94  DNPYYKNRPPQKMRGNKPLL 113


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -1

Query: 366 ETV*SFGCIPVNISWRKFFRQSHRRGHIPRHSSRGC 259
           + V +  C P   SWR FF       H P    R C
Sbjct: 349 KVVRTLSCDPDYHSWRIFFGSDRCANHPPSFDERSC 384


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 244 PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 348
           P  R      V W MP  + +       N+HW AP
Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/77 (22%), Positives = 31/77 (40%)
 Frame = +3

Query: 33   QYLYTK*INSVFF*SPLRIYTR*QLCHRRYVFAEKSIVPSAGQMVRRTRTRVNFTAKRTT 212
            +YL+++  + ++  SP R     + C    V  E  IVPS+ Q     +      + +  
Sbjct: 967  EYLFSQESSQLWDDSPYRSIFEDRRCSTSAVILESGIVPSSNQSDSLNKEDAEEKSPKPN 1026

Query: 213  THSTMTIVKNTACEVGI 263
              +  +I K     V I
Sbjct: 1027 VVNVTSITKTAGASVEI 1043


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 155 GSDGKTYENPCEFYCEKDND 214
           G   K YENP  +  ++DND
Sbjct: 2   GPKSKEYENPSSYKNDEDND 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,483
Number of Sequences: 5004
Number of extensions: 54850
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)