Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_O04
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639... 31 0.79
01_07_0379 + 43177978-43178572,43178643-43178674 29 2.4
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 28 4.2
01_06_1092 + 34469732-34470118 28 4.2
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 28 5.5
09_01_0053 + 873918-874411,875255-875492,875682-875702 27 9.7
08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569 27 9.7
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 27 9.7
01_05_0271 + 20276965-20278674 27 9.7
>01_01_0010 -
62670-62783,62877-63020,63339-63431,63665-63779,
63902-64152,64248-64431,64694-64950
Length = 385
Score = 30.7 bits (66), Expect = 0.79
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 466 PSLPRTGSFSRVHIHGCKLASLAPWHSPSCSIVRDGIIFWVHSSEH*LA*VFP 308
PS FS V I+ C L L +S S V+DG++F+ + H LA + P
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITP 241
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 227 HSAVCRCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 114
+S C C FR+ T S+T +HL R +YR++ Y+ A
Sbjct: 159 YSCAC-CAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 167 YHLTRRRDYRFFRKYITAVAELL 99
YHL R DY ++R+++ V ELL
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELL 886
>01_06_1092 + 34469732-34470118
Length = 128
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 396 GAKLASLHPCICTREKDPVRGSDGVTY 476
G A L P C R DPV G+DGVTY
Sbjct: 49 GGSEAQLCPVRCFRP-DPVCGADGVTY 74
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/76 (22%), Positives = 28/76 (36%)
Frame = +2
Query: 23 CAGSVFIHKMNKLGILLIAAAHIYSVTALPPPLCICGKIYSPVCGSDGKTYENPCEFYCE 202
C G + K + L AHIY+ + PP + + G DG PC
Sbjct: 316 CGGYIAASKEIIQHLKLSCPAHIYATSMSPPAVQQVISAIKVILGEDGSNRGYPCAQKLA 375
Query: 203 KDNDTQHYDNREKHRM 250
+ + ++ E +M
Sbjct: 376 RIRENSNFFRSELKKM 391
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 247 HARWASPATVPWNMPPSVALTEKLTPT 327
HA+W+ ATV + P + + E+L T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218
>08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569
Length = 109
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Frame = -2
Query: 323 GVSFSVRATDGGIFQ----GTVAGDAHLACGVFH-DCHSAVCRCPFRS 195
G S T GGIF+ T +A H C S CRCP S
Sbjct: 4 GSGASSLPTGGGIFEPPSSSTATAQPPVATAAIHFQCASTACRCPHLS 51
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 95 SVTALPPPLCICGKIYSPVCGSDGKTYENPCEFYCEKDNDTQHYDNRE 238
++++LP P + I S +C + + P + C++ TQ N +
Sbjct: 791 NISSLPEPQSLEVTINSLICEKHSRLLQRPLDLVCKRGTITQKASNTD 838
>01_05_0271 + 20276965-20278674
Length = 569
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 385 ANARELNWRVYIRVYARARKIQFAGATASL----TAICAS*NARHCPRPSLS 528
A+AR L+ R + ++AR R+ + + ATA+ T C C RP ++
Sbjct: 87 AHARRLDLRAALALFARMRRSRSSAATATAPDAHTFACVLRACADCSRPDVA 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,703
Number of Sequences: 37544
Number of extensions: 405208
Number of successful extensions: 1070
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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