Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_O01
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 27 2.7
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 27 3.5
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 4.7
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 26 4.7
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 26 6.2
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 26 6.2
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 6.2
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 6.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 8.2
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 25 8.2
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 8.2
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 8.2
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 8.2
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +2
Query: 227 NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTV 406
NSIF Q PTT+ T T + S V N G +T P S PT+
Sbjct: 64 NSIFGKTQQQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVDET 123
Query: 407 N 409
N
Sbjct: 124 N 124
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 140 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKI 244
K+YR L I+ LVGS ++ D+ + +S+ +I
Sbjct: 330 KLYRHLTIVGLVGSIDNDMSSTDVTIGAFSSLHRI 364
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 652 HWTANIQE*RTSAIRATYIDIIRVIFI 572
H +A ++ T+ IR T+IDII+ +++
Sbjct: 104 HKSAVVRHHNTTRIRETFIDIIKALYV 130
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 248 NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGR 340
+ +PT T P + VS PSA P + + N +
Sbjct: 164 SSSPTNTPSPNLPVSQPSASPHYSGDKNSAK 194
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 533 IPPPDR--F**CTAYRWYLQSELLL 465
+PPP+R + C RWY ELLL
Sbjct: 203 LPPPNRREYTGCVVTRWYRSPELLL 227
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 242 IPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNP 412
IPN T + SAP+ TV++ ++ + T D + P AP ++ P
Sbjct: 145 IPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTP 201
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = -1
Query: 298 WGTNSH-----GWFLSSCWCLIRYFENAVYFFEVYIIGVCL 191
WG H W ++ WCL F + + +F V GV L
Sbjct: 349 WGMARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLL 389
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 445 GWFLSSSGDGYRIDCSRSLRRYFENTVYIIGV 350
GW LS R+ + LR++FE +I G+
Sbjct: 337 GWMLSDINTTVRLTVVKVLRKFFETDSFIGGL 368
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 272 KPTMTVSAPSAVPT 313
KPT T SAPSA PT
Sbjct: 292 KPTATTSAPSASPT 305
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 230 SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNG 328
S F+ PN+AP+T + +P+ NTNG
Sbjct: 295 SNFRSPNRAPSTNNRYRGWNGSPTPAAGNNTNG 327
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 506 ITKTGQEGVCVKDYFCNNNEMT--NKDDTDNVDISGPNGGCSSFLDICCPVS 655
+ K +E + + Y N N T N+ + V + G +GG SF IC +S
Sbjct: 1008 VIKHQEEFLEPRVYPANRNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLS 1059
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = -1
Query: 175 DQYQDS*YSVHLSTVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFFV 14
D D Y++ L +C F + T+ S + + + +CFL++ F+
Sbjct: 180 DDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLLACAFL 233
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 8.2
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Frame = +2
Query: 356 DDINSVFKIPTQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEGVC 535
DD+N+ P TV+ +S PS+I N++++P + +
Sbjct: 90 DDVNATNANDATVPATVSSEVTHTSEGYADSNDSRPSSI---SNSSESPAPINSATASMS 146
Query: 536 VKDYFCNNNEMTNKDDTDNVDISG---PNGGCSSFLDICCPVSDQR---PPTDPITS 688
+ NN +T+ + +D+SG +GG ++ PV P TD TS
Sbjct: 147 PANNTSGNN-ITSPNVRGELDMSGNIAMSGGPTNTASTSGPVPHDMTVLPQTDSNTS 202
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 140 KMYRILAILVLVGSAHAQANANDIDLEEINSIFK--IPNQAPTTTKKPTMTV 289
K+ ++ + + +AHA NANDI +N K + P +KK +++
Sbjct: 43 KVVQLRSFIPFKNAAHALENANDISEGVLNDFLKNFLELNLPKASKKKKVSL 94
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 136 TVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFI 23
TV ++ Y+I + T+ N FL VS+C +I+ +
Sbjct: 45 TVPKWAYKIVTYSLTIQFNFKSLLFLFFVSICVVILVV 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,675
Number of Sequences: 5004
Number of extensions: 63110
Number of successful extensions: 199
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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