Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_O01
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 31 0.69
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 30 1.6
12_02_0230 + 15973390-15974645,16002878-16003097 30 2.1
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 3.7
04_01_0121 + 1253201-1253584 28 6.4
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 28 8.5
05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828 28 8.5
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 31.5 bits (68), Expect = 0.69
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Frame = +2
Query: 242 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 409
I NQAP PT A + P V N G+ G Y V +PTQ+ TV
Sbjct: 281 IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTVP 340
Query: 410 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTPC--ITKTGQEGVCVKDYFCNNNEMTNKDD 583
+ AP I+ T N P + +G + F N+ M +D
Sbjct: 341 ASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDL 400
Query: 584 TDNVDISGPN 613
+ +S P+
Sbjct: 401 RRPLMVSTPS 410
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 236 FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 397
++I P T P S P+ P V+ + R D D D V +P +P
Sbjct: 101 YQITPAKPATVTAPAAAASLPAPPPPVSARERQRRRDVDDDKPAIVLPLPPPSP 154
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 29.9 bits (64), Expect = 2.1
Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = +2
Query: 242 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 409
I NQAP PT A + P V N G+ G Y V +P Q+ TV
Sbjct: 54 IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTVP 113
Query: 410 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTPC--ITKTGQEGVCVKDYFCNNNEMTNKDD 583
+ AP I+ T N P + +G + F N+ M +D
Sbjct: 114 ASKARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDL 173
Query: 584 TDNVDISGPN 613
+ +S P+
Sbjct: 174 RRPLMVSTPS 183
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 188 AQANANDIDLEEINSIFKIPNQAPTTTK--KPTM 283
++A AN I +E I K+P++APT T+ KP M
Sbjct: 892 SRAEANMISVERILQYTKLPSEAPTITEGSKPPM 925
>04_01_0121 + 1253201-1253584
Length = 127
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 260 TTTKKPTMTVSAPS-AVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 397
TT K+ ++ PS A+P + T R T+ D +N+V+K Q P
Sbjct: 33 TTVKESIADLNLPSIAIPNLRTFQAMTRSVTNVDQVNAVYKAFLQPP 79
>06_01_0747 -
5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 467 AIVPTVNTNDTPCITKTG-----QEGVCVKDYFCNNNEMTNKDDTDNVDISGPNGG 619
A+ TV T ++ +T T +EG+ D+ C + TNKD D+V+ N G
Sbjct: 598 ALQGTVFTGESKSLTDTQICSELEEGISSFDHCCPEGDNTNKDWADSVENGFHNCG 653
>05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828
Length = 77
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 463 WGTFNGGWFLSSSGDGYRIDCSRSLRRYFENTVYIIG 353
W FNG +L S + CSR++ YF++ Y++G
Sbjct: 43 WDDFNGPNYLFSGECSMLMSCSRAV--YFKDARYLLG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,719
Number of Sequences: 37544
Number of extensions: 400333
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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