Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N24
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0009 + 11463049-11463063,11464136-11464492                       27   9.0  
05_07_0084 - 27587307-27589175                                         27   9.0  

>09_03_0009 + 11463049-11463063,11464136-11464492
          Length = 123

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 384 RVLVKRSRARPLARVSYYITNVVSKDITVEPPGHDDD 494
           R    RS    + R S  I    S+D+  +PPG D+D
Sbjct: 82  RSKTSRSHTSTICRESRVIYGRHSRDLREQPPGEDED 118


>05_07_0084 - 27587307-27589175
          Length = 622

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 375 KMFRVLVKRSRARPLARVSYYITNVVSKDITVE 473
           +M+ + V   R   LA   YY+  VVSKD+  E
Sbjct: 583 QMYELTVDTPRKPELAPPGYYLVYVVSKDVPSE 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,655,707
Number of Sequences: 37544
Number of extensions: 131130
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)