Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N18
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110...    30   0.64 
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    28   2.0  
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606...    28   2.6  
07_03_0897 - 22389116-22389600,22389611-22389728                       27   6.0  

>09_04_0606 +
           18909065-18909218,18909674-18909737,18910895-18911023,
           18913680-18913830,18914369-18914491,18915638-18915711,
           18916048-18916591,18916948-18917085,18917159-18917203
          Length = 473

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 155 PVMQLYNSVIVSDYKAAVKTTFQLEKECRSDVISSVV 265
           P + L N +I+SD  A +    + E   + DVI+SV+
Sbjct: 252 PALDLINILIISDASALISFKMKYESFTKGDVINSVI 288


>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 23  DDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDS 133
           +  + + + VV   LV ++S   +C N A SIT N +
Sbjct: 838 ESSETLTVNVVAQVLVAQLSQEQICINQAASITGNQT 874


>01_06_1713 -
           39359558-39359590,39360000-39360074,39360437-39360662,
           39360792-39360880,39360960-39361053,39361134-39361318,
           39361415-39361582,39361682-39361822,39362327-39362545,
           39362628-39362744,39363154-39363248,39363662-39363743,
           39363864-39363926,39364157-39364216,39364312-39364476,
           39364574-39364759,39364890-39365180,39365262-39365405,
           39365492-39366172,39367045-39367362
          Length = 1143

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 358 VNLNYVLTGSVPETVKRIRRRLV 290
           + LN + TG++PE V++  RRLV
Sbjct: 574 IPLNKIQTGTIPERVRQAARRLV 596


>07_03_0897 - 22389116-22389600,22389611-22389728
          Length = 200

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 47  TVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNS 178
           +V  S L  R +   L + TAVS+ S+ S PF +  P    ++S
Sbjct: 52  SVDFSPLHRRGAAVVLSSRTAVSLLSSSSSPFAHQQPCRPYWSS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,685,517
Number of Sequences: 37544
Number of extensions: 143903
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)