Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_N16
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical ... 29 1.7
U80026-3|AAC25845.2| 354|Caenorhabditis elegans Hypothetical pr... 28 3.0
U10402-6|AAV34793.1| 360|Caenorhabditis elegans Tryptophanyl (w... 28 4.0
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 28 4.0
AB096634-1|BAC76734.1| 360|Caenorhabditis elegans tryptophanyl-... 28 4.0
Z93394-2|CAB07701.2| 251|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z92817-1|CAB07296.1| 367|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical... 27 5.3
U58756-10|AAC48087.1| 310|Caenorhabditis elegans Hypothetical p... 27 9.2
U51997-5|AAG24065.1| 668|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical ... 27 9.2
>AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical
protein Y71H2AM.10 protein.
Length = 871
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 123 CDCRSDIRL*WCRQESVRTSHRVISYTFNKTCRRSLFPVPATRTE-NQRYSDQRFREWLS 299
C R + W + RTS +SYT ++ C ++ +P E N R + Q+ +WL+
Sbjct: 88 CVIRIPVPFSWFPVDQNRTSVLSVSYTVSEKCDQNFHDLPQHLIEVNSRIAKQKI-DWLA 146
Query: 300 GGID 311
+
Sbjct: 147 NATE 150
>U80026-3|AAC25845.2| 354|Caenorhabditis elegans Hypothetical
protein EGAP9.3 protein.
Length = 354
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 64 KMYKIFILLICVIAVVQSKSVIVGQTYDYSGVVRKVY 174
K +KI ++I VI ++ + +V + YDY + KVY
Sbjct: 12 KNHKILFIVILVILLISIVNWMVPRYYDYRQIPTKVY 48
>U10402-6|AAV34793.1| 360|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform b protein.
Length = 360
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 192 ISYTFNKTCRRSLFPVPATRTENQRYSDQRFRE 290
++Y FNKT +FP+P T + RE
Sbjct: 193 LAYAFNKTYETEIFPIPKQLTRESHARIRSLRE 225
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 192 ISYTFNKTCRRSLFPVPATRTENQRYSDQRFRE 290
++Y FNKT +FP+P T + RE
Sbjct: 483 LAYAFNKTYETEIFPIPKQLTRESHARIRSLRE 515
>AB096634-1|BAC76734.1| 360|Caenorhabditis elegans
tryptophanyl-tRNA synthetase (mitochondrial)protein.
Length = 360
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 192 ISYTFNKTCRRSLFPVPATRTENQRYSDQRFRE 290
++Y FNKT +FP+P T + RE
Sbjct: 193 LAYAFNKTYETEIFPIPKQLTRESHARIRSLRE 225
>Z93394-2|CAB07701.2| 251|Caenorhabditis elegans Hypothetical
protein Y48E1C.3 protein.
Length = 251
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/61 (16%), Positives = 29/61 (47%)
Frame = +1
Query: 79 FILLICVIAVVQSKSVIVGQTYDYSGVVRKVYERVIESSAIPLIKRVEEVYFQFPQPEQK 258
F+LLICV + ++I+ + + +++ + + + ++ E ++ Q + K
Sbjct: 159 FLLLICVAILDSQTNIIIDNQFGLTEILKHINDLSMHLKVDEILTAAEAIFHQLSASQNK 218
Query: 259 I 261
+
Sbjct: 219 L 219
>Z92817-1|CAB07296.1| 367|Caenorhabditis elegans Hypothetical
protein W08G11.1 protein.
Length = 367
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 204 FNKTCRRSLFPVPATRTENQRYSDQRFREWL 296
F +R PVP R N+ D+ F EWL
Sbjct: 75 FGYEIKRPTLPVPTLRMLNEPTCDEVFSEWL 105
>AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical
protein K01A2.1 protein.
Length = 287
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 406 LCCCVLFNIKVYIVPIN 456
LC C FN K++IVP N
Sbjct: 260 LCACAQFNHKLFIVPAN 276
>U58756-10|AAC48087.1| 310|Caenorhabditis elegans Hypothetical
protein F58F9.1 protein.
Length = 310
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 435 FYIK*NTTTQLSINFYYIFEPGSPFALQFDVNK 337
F K + + + +++ + PG PFAL FD NK
Sbjct: 178 FNFKPHGISDIHVDYCGMTLPGRPFALDFDRNK 210
>U51997-5|AAG24065.1| 668|Caenorhabditis elegans Hypothetical
protein F19G12.2 protein.
Length = 668
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 435 FYIK*NTTTQLSINFYYIFEPGSPFALQFDVNK 337
F K + + + +++ + PG PFAL FD NK
Sbjct: 313 FNFKPHGISDIHVDYCGMTLPGRPFALDFDRNK 345
>AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical
protein C24G6.6 protein.
Length = 527
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 172 YERVIESSAIPLIKRVEEVYFQFPQPEQKIKGI 270
Y+ +I +S++ ++K+ F P P QKI+ I
Sbjct: 281 YDYIIVTSSLGVLKKYHHKMFTPPLPRQKIEAI 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,320,307
Number of Sequences: 27780
Number of extensions: 209447
Number of successful extensions: 518
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -