Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_N14
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 142 1e-35
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 131 4e-32
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 70 1e-13
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 28 0.41
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 0.54
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 0.54
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 27 0.94
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 26 2.2
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 2.2
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 24 6.7
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 24 6.7
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 24 8.8
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 24 8.8
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 142 bits (345), Expect = 1e-35
Identities = 67/122 (54%), Positives = 96/122 (78%), Gaps = 1/122 (0%)
Frame = +1
Query: 10 PSRHLYAEPATTKWIQENIPEWKS-SVMVSPDAGGVKRMTAIADRLDIDFAIIHKERKRA 186
P +LYAEP+ ++I+ENI + +V+VSPDAGG KR TA+ADRLD+DFA+IHKER++A
Sbjct: 143 PVDNLYAEPSVLRYIRENIDTTVNPTVIVSPDAGGAKRATALADRLDLDFALIHKERQKA 202
Query: 187 DERDTTVLVGNVKNRTAIMVDDLADTCDTIVKGAEALREAGASKIYAILTHGVLAGNAIE 366
+E VLVG+V+++ AI+VDD+ADTC T+ A+ L++ GA +YAI+THG+L+G AI+
Sbjct: 203 NEVSRMVLVGDVRDKLAILVDDMADTCGTLGLAAKTLKDNGAKAVYAIVTHGILSGKAIK 262
Query: 367 KI 372
I
Sbjct: 263 VI 264
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 131 bits (316), Expect = 4e-32
Identities = 63/121 (52%), Positives = 90/121 (74%)
Frame = +1
Query: 10 PSRHLYAEPATTKWIQENIPEWKSSVMVSPDAGGVKRMTAIADRLDIDFAIIHKERKRAD 189
P +L+ P +I NIP + ++V+VSPDAGG KR TAIAD L +DFA+IHK R R +
Sbjct: 165 PVDNLFGRPLLKHYISLNIPNYHNAVIVSPDAGGAKRATAIADALGLDFALIHKNR-RHE 223
Query: 190 ERDTTVLVGNVKNRTAIMVDDLADTCDTIVKGAEALREAGASKIYAILTHGVLAGNAIEK 369
+ +LVG+V+N+ AI++DDL DT T+V+ AE ++E GASKIYA++TH VL+G+AIE+
Sbjct: 224 YGTSLMLVGDVQNKVAILIDDLIDTAYTLVRAAEFVKEHGASKIYALVTHCVLSGDAIER 283
Query: 370 I 372
+
Sbjct: 284 V 284
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 69.7 bits (163), Expect = 1e-13
Identities = 27/59 (45%), Positives = 46/59 (77%)
Frame = +1
Query: 10 PSRHLYAEPATTKWIQENIPEWKSSVMVSPDAGGVKRMTAIADRLDIDFAIIHKERKRA 186
P +LYAEP +WI+ N+ +W+ +V+VS + GG KR+T++AD L++DFA+I+ +R+R+
Sbjct: 141 PVDNLYAEPNIAEWIRRNVDDWEEAVVVSKNPGGAKRVTSLADTLNLDFALINTDRQRS 199
Score = 37.9 bits (84), Expect = 5e-04
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 208 LVGNVKNRTAIMVDDLADTCDTIVKGAEAL-REAGASKIYAILTHGVLAGNAIEKI 372
LVG+V +TA+++DD + + +E L + GA ++ I THG+ ++ +
Sbjct: 296 LVGDVNGKTALLIDDTIENPTAFIVASEHLVKRCGAKRVIVIGTHGIFQNKCLKDL 351
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 28.3 bits (60), Expect = 0.41
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 4 QYPSRHLYAEPATTKWIQENIPEWKSSVM-VSPDAGG 111
QY S+ Y E T W+ +IP + + + +PD GG
Sbjct: 1918 QYLSQKRYDETVRTMWLNGSIPSYIARQLDANPDTGG 1954
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 52 IQENIPEWKSSV-MVSPDAGGVKRMTAIADRL---DIDFAIIHKERKRADERDTTV 207
+QE + E+ + +SP+ ++R+ + RL D +FA K K A ER V
Sbjct: 1007 LQEKLREYSEELDQMSPNLRAIERLETVETRLAKLDEEFAAARKAAKNAKERFNAV 1062
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 0.54
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 40 TTKWIQENIPEWKSSVMVSPDAGGVKRMTAIADRL 144
T W +E I + K S++ PD+ K + A+AD++
Sbjct: 339 TITWAKEYIKKAKDSLLCLPDSPARKALFALADKV 373
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 0.94
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 4 QYPSRHLYA-EPA-TTKWIQENIPEWKSSVMVSPDAGGVKRMTAIADRLDIDFAIIHK 171
+YP + EPA ++ W+++ PE + V + + G +K ++ + ++I+F + K
Sbjct: 390 EYPCDSFFPFEPAESSDWVRKAHPELEKFVGIPVEEGRLKAASSNKEEVEIEFELYGK 447
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.8 bits (54), Expect = 2.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 38 LLLNGYKKIFQNGNQVSWSRLMLEES 115
LLL+GY+ ++ +GN+ + + + ES
Sbjct: 220 LLLDGYRFVYHDGNRTTMESISVPES 245
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 2.2
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 158 QLYIKREREPMSEIQLFLLVT*KTERQSWLTIWLIHVIQSSKVQKH*EKLVQ 313
Q+Y+K ER+ S++Q ++ +RQ L ++ V++ + KH + LVQ
Sbjct: 646 QIYLKEERQENSDVQEQVV----RDRQFELQASIVRVMKQKEKMKH-DDLVQ 692
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 24.2 bits (50), Expect = 6.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 78 FPFWNIFLYPF 46
FP+WN+ + PF
Sbjct: 313 FPYWNVLILPF 323
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 169 KERKRADERDTTVLVGNVKNRTAIMVDDLADTCDTIVKGAEALREAGA 312
++RK DE+ T +K+ A M+D V+G + ++ GA
Sbjct: 153 EDRKEEDEKSITDTTTGMKDFYASMLDRQEKIHQAAVEGVQNSKKTGA 200
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 23.8 bits (49), Expect = 8.8
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -1
Query: 357 VSC*NSVGQYCVNLACTSFSQCFCTFDDCITCIS---QIVNHDCRSVFHVTNKNSCISLI 187
VS N++ C NL + S+ F D+C+ ++ +V+ S + N S + ++
Sbjct: 335 VSVINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRNLVSLKIESPGGIINDGSILDVL 394
Query: 186 GSL 178
+
Sbjct: 395 NQI 397
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 23.8 bits (49), Expect = 8.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 159 CKVYIQPIGNSCHPFDSSSIRR 94
C +I+P G+S P D + ++R
Sbjct: 145 CLFFIRPTGHSLRPIDIAVLKR 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,617
Number of Sequences: 5004
Number of extensions: 28675
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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