Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_N12
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.50
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 29 0.87
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 28 1.2
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 28 1.5
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 28 1.5
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.0
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.7
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 27 2.7
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 4.7
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 4.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 6.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 8.1
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 389 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 282
F+ S IS ++N R Y+ I YCF Y++
Sbjct: 4 FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 128 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 30
+L + L+ ++WV VT + G YGY LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = -3
Query: 674 DLYGLIFVNMEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIGVVFN 495
D++G + M ++ F+ FV T ++ + L R + I+D F+G N
Sbjct: 145 DMFGPL---MSVAIITAFVCTFVLYTG---TLLFGDRLFDKPHRLSGNPIYDAFMGACLN 198
Query: 494 PSINNVSCFFIFTEI*VLHFRIKHIS 417
P + + F +F E+ + F + IS
Sbjct: 199 PRLGKLLDFKMFFEVRIPWFILFFIS 224
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 562 SVFS*MQFTLREVGKTNLIRN*HKTVHSMLTKIKPYKSL 678
S FS L + K NL+ + + + +S T+I PY SL
Sbjct: 130 STFSTSTSDLNNIEKDNLVNSEYSSKYSSTTRIYPYHSL 168
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/82 (25%), Positives = 43/82 (52%)
Frame = +3
Query: 390 LNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCV 569
L D VV R V +E +++ G N + + + +T+K+++ LV SS+ + + +
Sbjct: 322 LGDNSLVVIRAVDLAEQIHVS-GINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELL 380
Query: 570 LVNAIYFKGSWKDKFDKELTQD 635
L+++ F G + +LT+D
Sbjct: 381 LMSSSSFNGHSVSVQEYDLTKD 402
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.0
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Frame = +3
Query: 111 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 269
N N Q A + + KN S++ S + L IAS +H+ + I
Sbjct: 59 NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118
Query: 270 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 392
+ + ++ D+ +K+R + VDL+ K NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 2 ASEKHESHRQHEDYNNHI 55
++ +H SHR+HE Y H+
Sbjct: 145 SNHRHGSHRRHEPYRTHL 162
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = -3
Query: 656 FVNMEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIG---VVFNPSI 486
+V+ EW V+ + + L + Y AT + ++H++ I ++ + +
Sbjct: 488 YVDSEWEVVPHNIASYTTIKELGIGA-YGQVKLATYKSNKVHEVILKSISKSRILLDSWM 546
Query: 485 NNVSCFFIFTEI*VLHFRIKHISGHNSKLII*FITVSNVYFISQ 354
+ + EI +LHF H + K+I F N Y +++
Sbjct: 547 RDKDLGTVPMEISILHFLKAHSHPNIVKMITFFEDNENYYLLTE 590
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 440 HFRIKHISGHNSKLII*FI 384
HF + H+ GH SKL F+
Sbjct: 72 HFHVSHVPGHASKLYFAFL 90
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 475 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 323
A +FL F FC + +N SLD + +YTL+ L P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 279 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 449
ND + +A +DL QK+ L N ++ ++ D+F+ R + + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 378 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 518
NG ++ D VV VF + QN KNE EA+ T V D T +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,198
Number of Sequences: 5004
Number of extensions: 60710
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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