Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_N11
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0894 + 12226006-12226484,12226601-12226709 31 0.60
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 30 1.4
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 29 2.4
05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866 29 2.4
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 29 2.4
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 4.2
07_03_1155 - 24413270-24413728 28 4.2
02_04_0376 - 22474473-22476947 27 7.4
07_01_0942 + 7957776-7958004,7958113-7958708 27 9.8
06_03_0046 - 15852653-15854560 27 9.8
04_04_1339 + 32760424-32760584,32762428-32764462 27 9.8
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087... 27 9.8
>03_02_0894 + 12226006-12226484,12226601-12226709
Length = 195
Score = 31.1 bits (67), Expect = 0.60
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 417 PQTGSTGGQVWSSAYWLADIKASFSILIRTNPTCLRSLRCRLPDPKPWCRMLG 259
P G GG+V ++A + + +S ++++ T P C ++R P P +G
Sbjct: 103 PPLGYCGGRVEATATFSSSYSSSTAVMLPTQPKCSTTMRMTPGHPPPLANEVG 155
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 379 GRPNLSASGAGLWN----FDQNTRLSTGGSLSTYWTREA*CPVPRS 504
GRP LS +G L N +D RLS +L W RE P+P+S
Sbjct: 621 GRPILSEAGFDLLNNLLTYDPEKRLSADAALQHEWFREV--PLPKS 664
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 309 SLRCRLPDP-KPWCRMLGPSNLPRSSLKNCRVYPALPN-NPSSFCPSVPNTFPLPMFLSH 136
SLRC L P+ R LGPS+LP+ +L + P+ PN + S + P +P+ H
Sbjct: 61 SLRCPLCSQCVPFSRALGPSSLPK-NLALISLLPSPPNPSRSRTAAAAPPPPHVPLHADH 119
>05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866
Length = 350
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 452 PPVDKRVFWSKFHKPAPLADRFGLP 378
PP FW KF P + D GLP
Sbjct: 108 PPHKVEEFWQKFRPPGTMMDSMGLP 132
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 53 VSMPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 166
+++P S + +Y K Q + PR + W KN+G K+
Sbjct: 644 LTVPASVDQLLSDYAKRFHQIKTPRKLLWKKNLGTVKL 681
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 65 PSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQFFN 235
PSY R F + V +DK I +G G L + D G F A R F+
Sbjct: 579 PSYGYRGRVMLAFEENGSSKIGVRFDKQIPDGNDLGGLCEEDHGFFCSADLLRPDFS 635
>07_03_1155 - 24413270-24413728
Length = 152
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 294 LPDPKPWCRMLGPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLP 151
LP P+ + P LP + YPA+P P P P PLP
Sbjct: 85 LPKPELPPHPVVPEMLPHPVVPELPHYPAVPGFPKHGLPPKPELPPLP 132
>02_04_0376 - 22474473-22476947
Length = 824
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 213 PALPNNPSSFCPSVPNTFPLPM 148
P+LP P+ PS+P + P+P+
Sbjct: 33 PSLPRLPALLTPSLPESLPVPL 54
>07_01_0942 + 7957776-7958004,7958113-7958708
Length = 274
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -2
Query: 537 PPHPL*NSCWNGPWNGTSGFPRPISA--K*XXXXXXSVLVKVPQTGS--TGGQVWSSAYW 370
PP P+ N + G NG + +P ++ + S P S TGG W+SA W
Sbjct: 3 PPPPMENPRFEGGENGDNDYPLVATSDGEAVSSPSPSAAASTPTAASAPTGGSWWTSASW 62
>06_03_0046 - 15852653-15854560
Length = 635
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 240 SSLKNCRVYPALPNNPSSFCPSVPNTFP 157
S K VYP +P++P + S P FP
Sbjct: 291 SPAKKMAVYPRIPSSPRNTVQSNPQNFP 318
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 59 MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKVFGTLG 181
+PP + ++ F + R +TW N+GN + T G
Sbjct: 511 LPPEIVDISEKFRAFYLGTHNGRRLTWQTNMGNADIKATFG 551
>03_05_0155 -
21307001-21307239,21308217-21308320,21308564-21308772,
21308773-21308838,21308933-21308997,21309716-21309942,
21310156-21310269,21310515-21310522,21310964-21311053,
21311167-21311359,21312934-21313024,21313364-21313496,
21314756-21314896,21315017-21315078,21315159-21315246,
21315523-21315952,21316067-21316173
Length = 788
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 315 GRLDWS*LEWKSWPLYQPANRRKT 386
GR+DW +++ S P+Y+ N+ T
Sbjct: 632 GRIDWCSMKFSSSPIYEANNKHMT 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,626
Number of Sequences: 37544
Number of extensions: 455002
Number of successful extensions: 1112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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