Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N11
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    29   2.2  
AF098985-7|AAC67417.1|  306|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    27   8.8  
AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin...    27   8.8  

>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 50  QVSMPPSYKERYPEYY-KFSKQARHPRDVTWDK 145
           +V +PP+  ER  +Y  KFS   RHP    W K
Sbjct: 4   EVEVPPTTYERLQQYKEKFSDALRHPDSPDWYK 36


>AF098985-7|AAC67417.1|  306|Caenorhabditis elegans Hypothetical
           protein C08G5.6 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 240 IAVSWKGQAYGTRVLGPAGDTSNFGGRLDWS*LEWKSWPLYQPANRRKTKPVRQWSRFV 416
           I VSW+     T+   P G+    G +L WS  E K+ P      ++KTKP ++ + FV
Sbjct: 201 ILVSWR---LTTKKQRPRGNWEKEGSKLFWSIYEHKTKP------KKKTKPKKKQNPFV 250


>Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical
           protein JC8.6b protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 339 LIRTNPTCLRSLRCRLPDPKPWCRMLGPSNLPRSSLKNCRVYPALPNNPSSF 184
           L++  P    S R  +P P+P  R  GPS  P SS    R    L  +PS +
Sbjct: 67  LVKDEPIDTSSHRVYVPPPRPVQRKPGPST-PGSSQYTVRNLSNLSGSPSMY 117


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -2

Query: 285 PKPWCRMLGPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLP 151
           P P C+   P   P        V P  P  P+ FCP  P   P P
Sbjct: 31  PTPMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPP 75


>AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin
           protein 71 protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 280 FWVRQATPQTSEAGWIGPN*NGKAG 354
           F+ R A  Q++E+ WIG + NG +G
Sbjct: 73  FYARSAFGQSAESFWIGLSRNGSSG 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,711
Number of Sequences: 27780
Number of extensions: 345234
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)