Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N09
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    30   0.26 
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    29   0.78 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.4  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.1  
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    26   5.5  
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    25   9.6  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 308 PAPTIHCDENWDDEESATYIPDPWKNPYIIK 400
           P P     E+WDDEE   +IP    NP  I+
Sbjct: 298 PDPEAQKPEDWDDEEDGDWIPSEIINPKCIE 328


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  CPYNGVHSIDHYKLHLHLVRC 139
           CPY+  H+I  ++L  HL RC
Sbjct: 57  CPYDHKHTIVRHRLEYHLKRC 77


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 287  RPVVPVQPAPTIHCDENWDDEE 352
            + V P Q A T+  DEN+DD+E
Sbjct: 1073 KSVSPKQAARTLDIDENYDDDE 1094


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 266 YIMDDDQRPVVPVQPAPTIHCDENWDDEES 355
           Y  DDD++ +   QPAP  + +E +++  S
Sbjct: 621 YSSDDDRKTISETQPAPKQNINEEFENSTS 650


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
 Frame = +2

Query: 248 MLDNMLYIMDDDQRPVVPVQPAPTIHCDENWDDEESATYIPDPWKNPYIIKKVKGATKSE 427
           +L + +Y +   +  ++PV  +   HC  +  +E     I      P +   +  AT   
Sbjct: 255 LLRSEIYTLPRSKSVIIPVLISTIHHCTSDSFNELEKLIISKITGEPLLYINLFKATLVT 314

Query: 428 RRRARMEGVKS-YRARQLISE*INIPRIAGSCTFLHKLKLTTPIVFYPFVLDLL---LRI 595
           R+ +R+    S ++A   I   ++   I    + L   +++  +  YP + DL+   +RI
Sbjct: 315 RKGSRVSDYPSFFKAYLQIPNLVSWENIESDLSVL-IFEISALLFVYPQISDLMPHTVRI 373

Query: 596 ISSLVQYNSNIRKSFL 643
           IS L Q   ++  SF+
Sbjct: 374 ISFLQQGPLHLFFSFV 389


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 83  YNGVHSIDHYKLHLHLVRCGKQHPRAKIAK 172
           Y+   S+  ++ H  LVR G+  P  K+A+
Sbjct: 76  YDSTESMKKFEPHYRLVRVGQAEPIQKVAR 105


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 83  YNGVHSIDHYKLHLHLVRCGKQHPRAKIAK 172
           Y+ V ++  ++ H  LVR G   P  K+A+
Sbjct: 76  YDDVEAMKKFEPHYRLVRVGHAEPIQKVAR 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,081
Number of Sequences: 5004
Number of extensions: 56260
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)