Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N07
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781...    60   1e-09
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    30   1.3  
01_01_0274 - 2263304-2264211,2264490-2264673                           30   1.3  
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488...    27   9.2  

>09_04_0345 +
           16876489-16876614,16876718-16876876,16877989-16878102,
           16878701-16878882,16879142-16879241,16879597-16879638,
           16879818-16879994,16880084-16880175,16880633-16880779,
           16880832-16881036
          Length = 447

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
 Frame = +1

Query: 7   AAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLRGSF----------SETGINEFLRGL 156
           A  Q  LE+ + +GG+GYPAM  +N KK  ++ LR +F               +EF++  
Sbjct: 337 AGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLRSAFQLDEITCLITKPVSCSEFVKEA 396

Query: 157 SFGRGQTAPVKGAEMPKITTTEPWDGNDGELPLEEDIDLSDV 282
             G     P+ G   P I  +EPWDG DGE+  E++  L ++
Sbjct: 397 GRGGKGNLPLDGT--PTIVQSEPWDGKDGEVIEEDEFSLEEL 436


>01_01_1209 -
           9738501-9738516,9738703-9739161,9739389-9739608,
           9739708-9739831,9739927-9740635,9741826-9742132,
           9742213-9743704
          Length = 1108

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 170 PRPNERPLRNSLMPVSEKD-PLRVENLSFFALTTAMAG*PNPPSSKASSR 24
           PRP ++P  +SL+P  + + PLR + L+F             PSS AS R
Sbjct: 12  PRPTQQPPASSLLPPPQPEPPLRADRLAFSLEVPDPFRREPDPSSAASQR 61


>01_01_0274 - 2263304-2264211,2264490-2264673
          Length = 363

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +1

Query: 7   AAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLRGSFSE-TGINEFLRGLSFGRGQTAP 183
           AA   + EE LELG  G P +A V           G+ SE  GI++   GL    G+  P
Sbjct: 103 AAGPGSTEEDLELGAPGLPRVAEVGLSGSDVLRFGGASSEKPGISDGFHGLDLTVGE-LP 161

Query: 184 VKGAEMPKITTTEPWDGNDGELPLEED 264
           ++G +       E  D     L +E D
Sbjct: 162 LEGVDAIVFAGEELLDIVGAGLEIEVD 188


>09_02_0140 +
           4879319-4879968,4881443-4881942,4884230-4884368,
           4886005-4886156,4886267-4886532,4886902-4887028,
           4887111-4887179,4887270-4887518,4887636-4888012
          Length = 842

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 28  EEALELGGFGYPAMAVVNAKKLKFSTLRGSFSETGINEFL 147
           E+ L  GGFGY    ++         LR   S  G+ EFL
Sbjct: 528 EQVLGKGGFGYVYYGILEEGTQVAVKLRSQSSNQGVKEFL 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,416
Number of Sequences: 37544
Number of extensions: 235259
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)