Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N07
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...   137   7e-33
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    99   3e-21
Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score =  137 bits (331), Expect = 7e-33
 Identities = 60/100 (60%), Positives = 78/100 (78%)
 Frame = +1

Query: 4   EAAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLRGSFSETGINEFLRGLSFGRGQTAP 183
           E AAQP LEE+ E+GGFGYPAM  +N +K K++ L+GSF + GI+EFLR LS+G+G+T+ 
Sbjct: 341 EGAAQPALEESFEVGGFGYPAMTALNFRKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSS 400

Query: 184 VKGAEMPKITTTEPWDGNDGELPLEEDIDLSDVDLEKDEL 303
           ++G   PKI  TE WDG DG LP E+DIDLSD+DL+K EL
Sbjct: 401 LRGDGFPKIQKTEKWDGKDGALPAEDDIDLSDIDLDKTEL 440


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
 Frame = +1

Query: 4   EAAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLRGSFSETGINEFLRGLSFGRGQTAP 183
           E  AQ  ++ A E+G +G+P +  ++ KK+ +ST  G FS  GI EFL  +++G+G+   
Sbjct: 332 EGGAQENVQRAFEIGDYGFPVLIAMSPKKMMYSTQIGQFSVDGIKEFLNAVNYGKGRVLE 391

Query: 184 VKGAEMP----KITTTEPWDGNDGELPLEEDIDLSDVDL-EKDEL 303
           +K   +     KI  T+PWDG D ELP+ EDIDLSDVD+ EK EL
Sbjct: 392 IKPTHLSNNFLKIVETQPWDGKDKELPVMEDIDLSDVDMDEKTEL 436


>Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical
           protein F36F2.8 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 549 TKH*TCMCSKNKLNNDVIAHGNYEQIKKTRNVKIYLCVKKLRNLN 415
           T+H TC  S   L N+V  HG  +     R +    C +  + +N
Sbjct: 19  TQHRTCRRSFQCLTNEVCHHGYCQSFDDNRCITSQFCPRNFKCIN 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,360
Number of Sequences: 27780
Number of extensions: 211165
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)