Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N07
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.79 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.79 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 447 YLCVKKLRNLNHLQRQVTYLSD 382
           +LC   + NL+ L R+  YLSD
Sbjct: 311 FLCYPSVMNLDDLTRRSLYLSD 332



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 369 CVLTCRINKLLVAVSDLNFLTF*HINKSLHFVFFLSAR 482
           C   C++N +L+ V     LTF +I   ++ V+ L  +
Sbjct: 242 CSGNCKLNDILLTVRPHLELTFENILSHINTVYVLRTK 279


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 447 YLCVKKLRNLNHLQRQVTYLSD 382
           +LC   + NL+ L R+  YLSD
Sbjct: 311 FLCYPSVMNLDDLTRRSLYLSD 332



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 369 CVLTCRINKLLVAVSDLNFLTF*HINKSLHFVFFLSAR 482
           C   C++N +L+ V     LTF +I   ++ V+ L  +
Sbjct: 242 CSGNCKLNDILLTVRPHLELTFENILSHINTVYVLRTK 279


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 112 GSFSETGINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWD 231
           GS++  G    LR +   RG+     G ++ +  T+  WD
Sbjct: 168 GSWTYDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWD 207


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 469 KNTKCKDLFMCQKVKKFKSLTATSNLFIR 383
           KN    D F   + + +  +  TSN FIR
Sbjct: 91  KNIWVPDTFFVNEKQSYFHIATTSNEFIR 119


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 469 KNTKCKDLFMCQKVKKFKSLTATSNLFIR 383
           KN    D F   + + +  +  TSN FIR
Sbjct: 91  KNIWVPDTFFVNEKQSYFHIATTSNEFIR 119


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 469 KNTKCKDLFMCQKVKKFKSLTATSNLFIR 383
           KN    D F   + + +  +  TSN FIR
Sbjct: 30  KNIWVPDTFFVNEKQSYFHIATTSNEFIR 58


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 253 LEEDIDLSDVDLEKDE 300
           L+E ++ +D+DLEK E
Sbjct: 299 LDEKLERNDLDLEKYE 314


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +1

Query: 574 HGCWCFYSHIKKDII 618
           H   C+ SH+  D++
Sbjct: 314 HNATCYLSHVDPDVV 328


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +1

Query: 574 HGCWCFYSHIKKDII 618
           H   C+ SH+  D++
Sbjct: 20  HNATCYLSHVDPDVV 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,091
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)