Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N05
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    29   0.39 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    29   0.52 
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   3.7  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   4.8  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    25   6.4  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   8.5  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 248 RNRSLSDVHQDLNIPVPSAVTNEPQAKRPRVDSSEVSSNAS 370
           ++ S+S  H  L+IP+P+   N      P+V SS  S +AS
Sbjct: 61  QDSSISFTHDPLHIPLPNPSNNNDNIFHPQVHSSFHSRSAS 101


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 290  PVPSAVTNEPQAKRPRVDSSEVSSNASIDGTKVYVLPNGSVACNKPLT----ELIHLVKP 457
            P+  A+T    +   R+D S  S         VY+ P+ SVA  KP      EL+   K 
Sbjct: 958  PIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKE 1017

Query: 458  HIRELVE 478
            + R++ E
Sbjct: 1018 YCRQITE 1024


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 224 ELLETSHFRNRSLSDVHQDLNIPVP-SAVTNEPQAKRPRVDSSEVSSNA 367
           +L++TSHF + SLS V+   ++    ++ ++ P +  P  + S +S NA
Sbjct: 444 QLVQTSHFTSTSLSAVNISESVVYSYTSSSSMPSSAIPSFNISLISQNA 492


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 342 IPQRFQAMLVLMGQRCMYYLMAQWHAI--SHLLN*YILSNHILEN-LLKILIC*QCGYH 509
           IP ++ A+++L  Q     L   +  I   +    Y  S  +L N L+K+++C   GYH
Sbjct: 13  IPMKYIALVLLTVQNSALILTLNYSRIMPGYDDKRYFTSTAVLLNELIKLVVCFSVGYH 71


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 KTMTDVKKVQEYKDSLKQKAEHLIH 186
           +T+  + +    K+ LKQK +HL+H
Sbjct: 180 QTLVPITQPDSKKNELKQKFKHLVH 204


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 374 DGTKVYVLPNGSVACNKPLTELIHLVKPH 460
           D     VLPNG+      + ++ H VKP+
Sbjct: 517 DALHACVLPNGNYEVGVHIADVTHFVKPN 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,709
Number of Sequences: 5004
Number of extensions: 51021
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)