Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N04
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.2  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   4.3  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   5.6  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    24   7.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   7.4  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    24   7.4  

>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 32  GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 130
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/63 (20%), Positives = 25/63 (39%)
 Frame = +3

Query: 12  FRTSTLSVPEWTTCSKIKLVHLRPPHTPMSLTATTTLWAEN*IFSXXXXXXWTSTPVGRS 191
           F T+ +S+ +    +K  L+     H P      + +W    + +        +TP+G  
Sbjct: 647 FGTANVSLQDLFAATKTGLLWFPLQHAPSGRVRMSVMWKPAQLNNDSISSMALATPIGAI 706

Query: 192 SIH 200
            IH
Sbjct: 707 RIH 709


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 18  TSTLSVPEWTTCSKIKLVHLRPPHTPMSLTAT 113
           T+  S    T C K   + L+PP +P+S T +
Sbjct: 150 TNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTS 181


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 204 NGVSNFFQPALKSSD 160
           +G+S  FQP LK+SD
Sbjct: 91  SGISKSFQPVLKTSD 105


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 356  KLKVYYNLCTKTYNSIYILKLIFYKSQL 273
            KL   Y L T+++  +  L+L+FYK  +
Sbjct: 1203 KLYERYYLITRSFIGVAALQLLFYKKNI 1230


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 344 YYNLCTKTYNSIYILKLIFYKS 279
           +  LC  ++ SIY  KL++ KS
Sbjct: 303 FSELCLSSFKSIYDTKLLYLKS 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,225
Number of Sequences: 5004
Number of extensions: 26901
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)