Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N04
         (396 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093660-1|AAH93660.1|  931|Homo sapiens transient receptor pote...    28   9.7  
BC093658-1|AAH93658.1|  931|Homo sapiens transient receptor pote...    28   9.7  
AJ271068-1|CAC01686.1|  876|Homo sapiens transient receptor pote...    28   9.7  
AJ271067-1|CAC01685.1|  815|Homo sapiens transient receptor pote...    28   9.7  
AJ271066-1|CAC01684.1|  931|Homo sapiens transient receptor pote...    28   9.7  
AJ006276-1|CAA06943.1|  931|Homo sapiens transient receptor pote...    28   9.7  
AF080394-1|AAC63289.2|  931|Homo sapiens transient receptor pote...    28   9.7  

>BC093660-1|AAH93660.1|  931|Homo sapiens transient receptor potential
            cation channel, subfamily C, member 6 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -1

Query: 246  EKEKLVLGSHEDL------MNGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKTSVCA 85
            EK+  +LGSHEDL         V +  QP+++SS+    L  F+ PPR+    +K  +  
Sbjct: 807  EKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKRLIKR 865

Query: 84   AVADAPI 64
             V  A I
Sbjct: 866  YVLQAQI 872


>BC093658-1|AAH93658.1|  931|Homo sapiens transient receptor potential
            cation channel, subfamily C, member 6 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -1

Query: 246  EKEKLVLGSHEDL------MNGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKTSVCA 85
            EK+  +LGSHEDL         V +  QP+++SS+    L  F+ PPR+    +K  +  
Sbjct: 807  EKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKRLIKR 865

Query: 84   AVADAPI 64
             V  A I
Sbjct: 866  YVLQAQI 872


>AJ271068-1|CAC01686.1|  876|Homo sapiens transient receptor
           potential channel 6, variant delta377-431 protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -1

Query: 246 EKEKLVLGSHEDL------MNGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKTSVCA 85
           EK+  +LGSHEDL         V +  QP+++SS+    L  F+ PPR+    +K  +  
Sbjct: 752 EKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKRLIKR 810

Query: 84  AVADAPI 64
            V  A I
Sbjct: 811 YVLQAQI 817


>AJ271067-1|CAC01685.1|  815|Homo sapiens transient receptor
           potential channel 6, variant delta316-431 protein.
          Length = 815

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -1

Query: 246 EKEKLVLGSHEDL------MNGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKTSVCA 85
           EK+  +LGSHEDL         V +  QP+++SS+    L  F+ PPR+    +K  +  
Sbjct: 691 EKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKRLIKR 749

Query: 84  AVADAPI 64
            V  A I
Sbjct: 750 YVLQAQI 756


>AJ271066-1|CAC01684.1|  931|Homo sapiens transient receptor potential
            channel 6 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -1

Query: 246  EKEKLVLGSHEDL------MNGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKTSVCA 85
            EK+  +LGSHEDL         V +  QP+++SS+    L  F+ PPR+    +K  +  
Sbjct: 807  EKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKRLIKR 865

Query: 84   AVADAPI 64
             V  A I
Sbjct: 866  YVLQAQI 872


>AJ006276-1|CAA06943.1|  931|Homo sapiens transient receptor potential
            protein protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -1

Query: 246  EKEKLVLGSHEDL------MNGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKTSVCA 85
            EK+  +LGSHEDL         V +  QP+++SS+    L  F+ PPR+    +K  +  
Sbjct: 807  EKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKRLIKR 865

Query: 84   AVADAPI 64
             V  A I
Sbjct: 866  YVLQAQI 872


>AF080394-1|AAC63289.2|  931|Homo sapiens transient receptor potential
            protein 6 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -1

Query: 246  EKEKLVLGSHEDL------MNGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKTSVCA 85
            EK+  +LGSHEDL         V +  QP+++SS+    L  F+ PPR+    +K  +  
Sbjct: 807  EKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKRLIKR 865

Query: 84   AVADAPI 64
             V  A I
Sbjct: 866  YVLQAQI 872


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,593,721
Number of Sequences: 237096
Number of extensions: 919759
Number of successful extensions: 1765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)