Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_N04
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical ...    29   1.2  
AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    28   2.8  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical
           protein Y62E10A.6 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 211 LNEWCIELLPTGVEVQRRGGRLEKIQFSAQRVV-VAVKDIGVCGGRRCTNFIFEHV 47
           + +W  +L  + ++ +     L K++   +R+  V VK+IG+  G R  +FIF  +
Sbjct: 235 IKDWDSKLEISEIDAKNLTESLPKLERKKKRLTEVLVKNIGIANGLRQCHFIFHRI 290


>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 33  VPEWTTCSKIKL-VHLRPPHTPMSLT 107
           V E   C K+K+ V+ +PPH P+ +T
Sbjct: 258 VREKKNCDKLKINVYFKPPHPPVEIT 283


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 45   TTCSKIKLVHLRPPHTPMSLTATTT 119
            +T   + +  +RPP TP + T+TTT
Sbjct: 1140 STIDTVSMACVRPPTTPTTTTSTTT 1164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,079,385
Number of Sequences: 27780
Number of extensions: 157087
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)