Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M24
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   0.47 
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    26   1.4  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   1.9  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   1.9  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    25   3.3  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   3.3  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   3.3  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   3.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    23   7.7  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 42  TILAVLLGLVALTYVNGNKVKSYICQG-YYSCEKCCVHLGSGC 167
           T+L + L LV+ T  +    +   C G YY    CCV +GS C
Sbjct: 9   TVLTLALSLVSKTSASQCSPRYGTCGGIYYDGPTCCV-VGSSC 50


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 95  ITVDVSQGYEAQ*NSQDCEFR 33
           + VDV +G+E   +++DCEF+
Sbjct: 162 MAVDVPEGFELLGSTEDCEFQ 182


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 78  TYVNGNKVKSYIC--QGYYSCEKCCVHLGSGCEKFNSSPFWFG 200
           T+ + N++    C  + +Y  +  C H G+   K  +S +W G
Sbjct: 361 TFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYWEG 403


>SPAC17G8.13c |mst2||histone acetyltransferase
          Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 94 LPLT*VKATRPSKTARIVNFDRSVSSF 14
          +P T +K+T  SKT  I+ FD + S +
Sbjct: 1  MPATILKSTASSKTLLIIKFDTNSSRY 27


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -1

Query: 251 IRVDSVWTGTGADLSVTSEPERRGIKLLAAGTKVNTAFLATVVSLAYVGLHFITVDVSQ 75
           +++ +   G  ADLSV +EP+ + I  + +    +     TV  L  V     +  +SQ
Sbjct: 1   MQIGAATEGVEADLSVNAEPDVKPIAKMLSACVGSVITTLTVTPLDVVKTRLQSESISQ 59


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = -2

Query: 292 LNTSQFNSLMESPKYGSTPSGQVQVQTSV*LPNQNGEELNFSQPEPR*TQHFSQ 131
           L+   FN   +  K          V   V  PNQ   E NFS       QHFSQ
Sbjct: 192 LDPEVFNQQSKETKKSLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQ 245


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 3   LN*LNEDTDLSKFTILAVLLGLVALTYVNGNKVKSYICQGYY-SC 134
           L+  N+ TD++K  ++A +  LV L  VN +  +    + YY SC
Sbjct: 324 LSYFNKPTDIAKLLVIARIPSLVKLNDVNISPNERLDAELYYTSC 368


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 147 VHLGSGCEKFNSSPFWFGSYTEVCTCTCPDGVDPYLGDSISELNCDVFRQ 296
           V++ S C  +  S   F  + E CT   P G + Y  D IS    D  +Q
Sbjct: 212 VYICSFCFCYYGSERQFQRHREKCTLQHPPGNEIYRDDYISFFEIDGRKQ 261


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +3

Query: 69  VALTYVNGNKVKSYICQGYYSCEKCCVHLGSGCEKFNSSPFWF 197
           V L+Y  G   ++ I   Y   +K    + +G       P WF
Sbjct: 549 VQLSYTRGTDARNAIILSYSEVQKILTSVATGFAGAMIFPVWF 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,189,408
Number of Sequences: 5004
Number of extensions: 21686
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)