Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M22
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    28   0.51 
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    27   1.2  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    26   2.0  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    25   4.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.2  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   8.2  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    24   8.2  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   8.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   8.2  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 39  TILAVLLGLVALTYVNGNKVKSYICQG-YYSCEKCCVHLGSGCEKLKSSPFW 191
           T+L + L LV+ T  +    +   C G YY    CCV +GS C  + S+P++
Sbjct: 9   TVLTLALSLVSKTSASQCSPRYGTCGGIYYDGPTCCV-VGSSC--IYSNPWY 57


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 92  ITVDVSQGYEAQ*NSQDCEFRHF 24
           + VDV +G+E   +++DCEF+ F
Sbjct: 162 MAVDVPEGFELLGSTEDCEFQIF 184


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 75  TYVNGNKVKSYIC--QGYYSCEKCCVHLGSGCEKLKSSPFWFG 197
           T+ + N++    C  + +Y  +  C H G+   K ++S +W G
Sbjct: 361 TFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYWEG 403


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 410 FFFYNMKKLKPMNGFFYLKQ-ARTLIVFILLITL 312
           F F  M+K+KP NG   L   +RTL+  +L ITL
Sbjct: 163 FLFSLMEKVKP-NGRLVLSTISRTLLARLLTITL 195


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 ILQLREMLCSPWFRLREVKIL 181
           +L+L E +  PW   REVK+L
Sbjct: 120 VLKLLENMPMPWEEYREVKVL 140


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 384 ETNEWFFLFKTSSNSHCFYT 325
           E N+W  L+K S N+   YT
Sbjct: 719 EINDWIGLYKLSDNASDLYT 738


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +3

Query: 66  VALTYVNGNKVKSYICQGYYSCEKCCVHLGSGCEKLKSSPFWF 194
           V L+Y  G   ++ I   Y   +K    + +G       P WF
Sbjct: 549 VQLSYTRGTDARNAIILSYSEVQKILTSVATGFAGAMIFPVWF 591


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 15  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 113
           T  E+  FTIL  + GL+   + N +   +Y C
Sbjct: 684 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 716


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 362 YLKQARTLIVFILLITLKTID 300
           YL + RTL+ F L+   KTID
Sbjct: 872 YLNRERTLLNFYLIENSKTID 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,524
Number of Sequences: 5004
Number of extensions: 33938
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)