Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M21
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810...    31   0.81 
07_01_0655 - 4910497-4911972,4912035-4912415                           28   4.3  
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386     28   5.7  
04_04_0225 + 23745404-23747788                                         27   10.0 

>03_05_0100 -
           20779387-20779641,20779824-20780629,20780757-20781011,
           20781107-20781221,20781301-20781353,20781517-20781777,
           20782804-20782854,20783081-20783329,20784765-20784990,
           20785968-20786132
          Length = 811

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = -3

Query: 254 FFIPFFSS---FLSC--WQFMWTQFVPVSSGYDVFLILYLRYQAPAKRWHRIHVKSY 99
           FFI F SS   +LS   +QF+  ++VPV+    VFL++ +        WH +HVK Y
Sbjct: 491 FFIVFMSSESIYLSAVLYQFVHGEYVPVAMS--VFLMIVMTV------WHYVHVKRY 539


>07_01_0655 - 4910497-4911972,4912035-4912415
          Length = 618

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 325 CRVDFFNISKCIRKNKPVWLILLLYYI 405
           C +     +KCI +  PVWL  ++YY+
Sbjct: 339 CSLQQVEEAKCILRVVPVWLTCIVYYV 365


>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
          Length = 837

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 157 KIKNTSYPLDTGTNCVHIN 213
           ++KNTSY   TG+NC++++
Sbjct: 263 RMKNTSYACSTGSNCLNMS 281


>04_04_0225 + 23745404-23747788
          Length = 794

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 301 EKRCIC-CFCRVDFFNISKCIRKNKPV 378
           +K C+  CFC V  FN   C +K  P+
Sbjct: 384 QKLCLTDCFCAVTVFNEGNCWKKKLPM 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,930
Number of Sequences: 37544
Number of extensions: 209995
Number of successful extensions: 375
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)