Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M19
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    69   4e-13
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   1.4  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   4.3  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.7  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   7.5  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    24   9.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    24   9.9  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +3

Query: 108 VNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFKKK 281
           VN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F KK
Sbjct: 2   VNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKK 61

Query: 282 AKNYKE 299
           AK  K+
Sbjct: 62  AKVTKK 67



 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 27/39 (69%), Positives = 32/39 (82%)
 Frame = +1

Query: 301 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 417
           +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 68  VVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 400 PSSSCHHQAQSAYNASGPPVTSPCSLHIP 314
           P+SS  + A + YNAS PP   P S + P
Sbjct: 287 PTSSYGNGASTNYNASRPPSNHPHSSNYP 315


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 236 TTGLWWSIQTHLQKEGEKL 292
           T GLW  ++T LQK  E+L
Sbjct: 754 TLGLWMELETELQKYTEQL 772


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 136 YVLRCLGTFTCNLYIILMKYTHC--*ICEQILLFVYSFFN 23
           Y + C  +  C LY ILM        IC+Q +L V+   N
Sbjct: 34  YCVVCFVSVLCRLYCILMSAASATQTICDQSILHVHGVEN 73


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 112 TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAE 219
           T      H  +N +  KFT+      L  GTP + E
Sbjct: 195 TMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVE 230


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 216 RRRYDRKQQGYGGQSKPIFKKKAKNY 293
           R  +DR Q GY G + P + +    Y
Sbjct: 329 RDSHDRHQHGYHGNANPYYAQNMNMY 354


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 373 QSAYNASGPPVTSPCSLHIPDE 308
           QS  N+  PP++SP S   P E
Sbjct: 328 QSCTNSPSPPLSSPASSASPSE 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,041
Number of Sequences: 5004
Number of extensions: 30054
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)