Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M19
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    77   6e-15
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    77   6e-15
U43282-2|AAY86313.1|   73|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical p...    27   8.8  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    27   8.8  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 38/65 (58%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
 Frame = +3

Query: 108 VNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFKKKA 284
           VNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF+KKA
Sbjct: 2   VNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKA 61

Query: 285 KNYKE 299
           K  K+
Sbjct: 62  KTTKK 66



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 26/39 (66%), Positives = 33/39 (84%)
 Frame = +1

Query: 301 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 417
           IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 67  IVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 38/65 (58%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
 Frame = +3

Query: 108 VNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFKKKA 284
           VNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF+KKA
Sbjct: 2   VNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKA 61

Query: 285 KNYKE 299
           K  K+
Sbjct: 62  KTTKK 66



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 26/39 (66%), Positives = 33/39 (84%)
 Frame = +1

Query: 301 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 417
           IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 67  IVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>U43282-2|AAY86313.1|   73|Caenorhabditis elegans Hypothetical
           protein T22E5.7 protein.
          Length = 73

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 406 FVPSSSCHHQAQSAYNASGPPVTSPCSLHIPDEVQFSL 293
           F+   +   + ++ +  +G P+T PCS+ + +E  FSL
Sbjct: 10  FIRRQTDDGEMKAYWGKAGAPITLPCSISLFNEESFSL 47


>Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical
           protein C40H1.3 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 177 QYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFKKKAKNYKE 299
           +Y   KER  A G     R     GG+ KPI K+K K  KE
Sbjct: 10  EYDDYKERRNAAGMG--SRASSRNGGRFKPIDKEKEKEKKE 48


>U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK1248.15 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 106 R*TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAED 222
           R TYP+S   +++N NV K TK     S R   PL   D
Sbjct: 424 RKTYPSSTYQSSQNGNVVKTTK---PNSNRPKIPLSLSD 459


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 174 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFKKKAKNYKENCTSSG 317
           S  KK  E  A + + RY+++ + Y     P    K  + K +  SSG
Sbjct: 597 SDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSG 644


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 307 LRLECADCKVRSQVALKRCKHFELGGDKK 393
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,447,973
Number of Sequences: 27780
Number of extensions: 181367
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)